RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 CPOQ8IVL8 374 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 OR52N1Q8NH53 320 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 TMEM234Q8WY98 164 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 ARSGQ96EG1 525 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 NEDD4LQ96PU5 975 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 GPX7Q96SL4 187 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-229ENST00000557348 ADAM19Q9H013 955 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 NUFIP1Q9UHK0 495 aaKnown RBP11.53□□□□□ -0.56
SHMT2-229ENST00000557348 ING4Q9UNL4 249 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 SCN2AQ99250 2005 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 RP1P56715 2156 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 LOC102723996A0A087X1L8 192 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 C12orf71A8MTZ7 269 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 IMPA2O14732 288 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 FADS1O60427 444 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 CSO75390 466 aaKnown RBP11.52□□□□□ -0.56
SHMT2-229ENST00000557348 RFPL3O75679 317 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 NTN1O95631 604 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 CH25HO95992 272 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 IGHA1P01876 353 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 CSF3P09919 207 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 GP1BBP13224 206 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 FUT1P19526 365 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 C4BPBP20851 252 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 IL32P24001 234 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 MSX1P28360 303 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 TALDO1P37837 337 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 RPS19P39019 145 aaKnown RBP11.52□□□□□ -0.56
SHMT2-229ENST00000557348 MAP2K6P52564 334 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 FXYD6P3P58550 94 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 RPS4XP62701 263 aaKnown RBP11.52□□□□□ -0.56
SHMT2-229ENST00000557348 BDH1Q02338 343 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 ZNF117Q03924 483 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 ACSM1Q08AH1 577 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 EXT1Q16394 746 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 BAK1Q16611 211 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 KLHL12Q53G59 568 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 NIPAL3Q6P499 406 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 YIPF7Q8N8F6 280 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 OR51A7Q8NH64 312 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 OPALINQ96PE5 141 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 OR5M11Q96RB7 305 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 DCLRE1CQ96SD1 692 aaKnown RBP11.52□□□□□ -0.56
SHMT2-229ENST00000557348 SOSTQ9BQB4 213 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 LIN7BQ9HAP6 207 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 MCCC2Q9HCC0 563 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 HINT3Q9NQE9 182 aaKnown RBP11.52□□□□□ -0.56
SHMT2-229ENST00000557348 SDHAF3Q9NRP4 125 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 ZNF275Q9NSD4 429 aaPredicted RBP11.52□□□□□ -0.56
SHMT2-229ENST00000557348 HAO2Q9NYQ3 351 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 GSTK1Q9Y2Q3 226 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 SPTBP11277 2137 aa11.52□□□□□ -0.56
SHMT2-229ENST00000557348 TRAV27A0A087WT01 109 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 LEUTXA8MZ59 168 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 AKAP8O43823 692 aaKnown RBP11.52□□□□□ -0.57
SHMT2-229ENST00000557348 MT-ATP6P00846 226 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 PDGFAP04085 211 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 CXCR1P25024 350 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 FGF9P31371 208 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-229ENST00000557348 CRYBB2P43320 205 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 GAS1P54826 345 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 ACTC1P68032 377 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 ACTA1P68133 377 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 C17orf67Q0P5P2 114 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 SSX1Q16384 188 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 NDUFAF6Q330K2 333 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 TRIQKQ629K1 86 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 MZT2AQ6P582 158 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 SHISA6Q6ZSJ9 500 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 BCDIN3DQ7Z5W3 292 aaKnown RBP11.52□□□□□ -0.57
SHMT2-229ENST00000557348 GPALPP1Q8IXQ4 340 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 DND1Q8IYX4 353 aaKnown RBP11.52□□□□□ -0.57
SHMT2-229ENST00000557348 PRR22Q8IZ63 422 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 KLHL36Q8N4N3 616 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 GATSQ8NAP1 163 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 ST8SIA1Q92185 356 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 MRPL48Q96GC5 212 aaKnown RBP11.52□□□□□ -0.57
SHMT2-229ENST00000557348 DMRTB1Q96MA1 342 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 GPR137Q96N19 417 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 TNFRSF13CQ96RJ3 184 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 KCNS3Q9BQ31 491 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 ULBP3Q9BZM4 244 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 FAM117AQ9C073 453 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 NRSN2Q9GZP1 204 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 C11orf54Q9H0W9 315 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-229ENST00000557348 FKRPQ9H9S5 495 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 APMAPQ9HDC9 416 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 NANSQ9NR45 359 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 GLS2Q9UI32 602 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 TEKT2Q9UIF3 430 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 ELF5Q9UKW6 265 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-229ENST00000557348 ASXL3Q9C0F0 2248 aa11.52□□□□□ -0.57
SHMT2-229ENST00000557348 TRIOO75962 3097 aa11.51□□□□□ -0.57
SHMT2-229ENST00000557348 TRBV11-1A0A0K0K1C0 115 aa11.51□□□□□ -0.57
SHMT2-229ENST00000557348 SLC25A12O75746 678 aa11.51□□□□□ -0.57
SHMT2-229ENST00000557348 NUDT14O95848 222 aa11.51□□□□□ -0.57
SHMT2-229ENST00000557348 TSPAN19P0C672 248 aa11.51□□□□□ -0.57
SHMT2-229ENST00000557348 CPEP16870 476 aa11.51□□□□□ -0.57
SHMT2-229ENST00000557348 ITPKBP27987 946 aa11.51□□□□□ -0.57
SHMT2-229ENST00000557348 RPL4P36578 427 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms