RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 OR5J2Q8NH18 312 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 BCAS4Q8TDM0 211 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 HIST1H2ACQ93077 130 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 S100PBPQ96BU1 408 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 MUCL1Q96DR8 90 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 WFDC6Q9BQY6 131 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 FNDC11Q9BVV2 318 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 PRR14Q9BWN1 585 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 LINC00470Q9BZP3 86 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 NANSQ9NR45 359 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 RIMS3Q9UJD0 308 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 MED31Q9Y3C7 131 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 MAGED1Q9Y5V3 778 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 SNX13Q9Y5W8 968 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 CIB4A0PJX0 185 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 ZNF587BE7ETH6 402 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 SLC43A1O75387 559 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 KRT33AO76009 404 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 MT-ND1P03886 318 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 ITGA2P17301 1181 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 IGHV1-2P23083 117 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 MPGP29372 298 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 TRAM2Q15035 370 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 MTX3Q5HYI7 312 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 GLYATQ6IB77 296 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 NANOGNBQ7Z5D8 188 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 PXKQ7Z7A4 578 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 RBM45Q8IUH3 476 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 EPHX4Q8IUS5 362 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 DEFB107AQ8IZN7 70 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 TMEM239Q8WW34 195 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 NSL1Q96IY1 281 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 AMBRA1Q9C0C7 1298 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 NDEL1Q9GZM8 345 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 OBP2BQ9NPH6 170 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 KRCC1Q9NPI7 259 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 DCAF13Q9NV06 445 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 B3GAT1Q9P2W7 334 aa12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 STX18Q9P2W9 335 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 PRPF19Q9UMS4 504 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-207ENST00000554051 NOTCH2Q04721 2471 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 OR5H1A6NKK0 313 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 CYSRT1A8MQ03 144 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 PDLIM1O00151 329 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 LYPD3O95274 346 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 STAMBPO95630 424 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 TNFRSF1BP20333 461 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 OR1E2P47887 323 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 SLC25A3Q00325 362 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 FAPQ12884 760 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 PIN1Q13526 163 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 NIPAL3Q6P499 406 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 KLHL24Q6TFL4 600 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 WDR88Q6ZMY6 472 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 VTCN1Q7Z7D3 282 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 CDC20BQ86Y33 519 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 ZNF433Q8N7K0 673 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 PIK3C3Q8NEB9 887 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 MCUR1Q96AQ8 359 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 ZNF775Q96BV0 537 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 SGTBQ96EQ0 304 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 BOD1Q96IK1 185 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 ADAD1Q96M93 576 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 NSMCE2Q96MF7 247 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 MOGAT1Q96PD6 335 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 ZNF385AQ96PM9 386 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 CDRT15Q96T59 188 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 PRSS27Q9BQR3 290 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 C1orf21Q9H246 121 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 ESRP2Q9H6T0 727 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 B3GAT2Q9NPZ5 323 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 AMDHD2Q9Y303 409 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 FAM32AQ9Y421 112 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 MAST4O15021 2626 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 CACNA1DQ01668 2161 aa12.69□□□□□ -0.38
CCDC88C-207ENST00000554051 NBPF19A0A087WUL8 3843 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 ENO4A6NNW6 628 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 DEFB108AA8MXU0 73 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 B2RBV5 119 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 KPNA4O00629 521 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 ARPC2O15144 300 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 TRAF3IP2O43734 574 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 ENTPD5O75356 428 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 RAD51DO75771 328 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 LYZL6O75951 148 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 THY1P04216 161 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 UMPSP11172 480 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 DNAJA1P31689 397 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 CLDN17P56750 224 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 POU3F1Q03052 451 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 ZP4Q12836 540 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 PPA1Q15181 289 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 STK11Q15831 433 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 ANKDD1AQ495B1 522 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 PAMR1Q6UXH9 720 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 TRPM8Q7Z2W7 1104 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 WFDC8Q8IUA0 241 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 P3H2Q8IVL5 708 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 RNF113BQ8IZP6 322 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 ZIC4Q8N9L1 334 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms