RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CCR9P51686 369 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 RAB38P57729 211 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 PITPNAQ00169 270 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 GGTLC2Q14390 218 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 KCNAB1Q14722 419 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 ODF4Q2M2E3 257 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 TUSC1Q2TAM9 212 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 CT45A2Q5DJT8 189 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 UBE2NLQ5JXB2 153 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 LINC01590Q5TEZ4 76 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 LEG1Q6P5S2 330 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF782Q6ZMW2 699 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 KANSL1Q7Z3B3 1105 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 SLITRK4Q8IW52 837 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 OR13H1Q8NG92 308 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 CEP76Q8TAP6 659 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 VSTM2LQ96N03 204 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 MOGAT1Q96PD6 335 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 NKX3-1Q99801 234 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 SEC22CQ9BRL7 303 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 LMF2Q9BU23 707 aaKnown RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 SPRTNQ9H040 489 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 RANBP3Q9H6Z4 567 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 METTL17Q9H7H0 456 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 HRASLSQ9HDD0 168 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 MKKSQ9NPJ1 570 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 B3GNT2Q9NY97 397 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 EIF3KQ9UBQ5 218 aaKnown RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 RPS6KB2Q9UBS0 482 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 ASXL3Q9C0F0 2248 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 IGKV1D-42A0A075B6H8 117 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 A0A0J9YY10 115 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 TVP23AA6NH52 213 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 C17orf51A8MQB3 221 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF879B4DU55 563 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 NPIPB9F8W1W9 429 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 ARPC1BO15143 372 aaKnown RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 APBB3O95704 486 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 CSTAP01040 98 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 HRGP04196 525 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 F13BP05160 661 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 FCER2P06734 321 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 TPOP07202 933 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF250P15622 560 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 AQP2P41181 271 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 TPMTP51580 245 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 ARPC4P59998 168 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 EXOSC2Q13868 293 aaKnown RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 ANGPT1Q15389 498 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 ESCO2Q56NI9 601 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 HACD4Q5VWC8 232 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 SIGIRRQ6IA17 410 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 CBLN3Q6UW01 205 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 UNQ9370/PRO34162Q6UXP9 181 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 APOOLQ6UXV4 268 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 NLRC3Q7RTR2 1065 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 OVCH1Q7RTY7 1134 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 POMGNT2Q8NAT1 580 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 OR2T35Q8NGX2 323 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 HOXB13Q92826 284 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 ELSPBP1Q96BH3 223 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 C3orf49Q96BT1 292 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 RBM18Q96H35 190 aaKnown RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 SEMA4CQ9C0C4 833 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 NARFLQ9H6Q4 476 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 COQ3Q9NZJ6 369 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 ERVK-19Q9WJR5 959 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 CLDN16Q9Y5I7 305 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 SLCO1B1Q9Y6L6 691 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 A0A087WUJ7 227 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 GSTZ1O43708 216 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-213ENST00000552720 GATBO75879 557 aaKnown RBP6.84□□□□□ -1.31
LIMA1-213ENST00000552720 HOXC4P09017 264 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-213ENST00000552720 ADRA2CP18825 462 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 DCTDP32321 178 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 RAD52P43351 418 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 CCR4P51679 360 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 RPL6Q02878 288 aaKnown RBP6.84□□□□□ -1.31
LIMA1-213ENST00000552720 STX4Q12846 297 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 ILF3Q12906 894 aaKnown RBP eCLIP6.84□□□□□ -1.31
LIMA1-213ENST00000552720 ZNHIT3Q15649 155 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-213ENST00000552720 CD226Q15762 336 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 LUZP2Q86TE4 346 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 PARGQ86W56 976 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 CCDC28AQ8IWP9 274 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 SLC38A6Q8IZM9 456 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 C10orf53Q8N6V4 93 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 BCORP1Q8N888 145 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 OR10AC1Q8NH08 325 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 OR8K3Q8NH51 312 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 OR56B4Q8NH76 319 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 C16orf52Q8NHV5 167 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 SYNPRQ8TBG9 265 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 SUN5Q8TC36 379 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 CLIP3Q96DZ5 547 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 SORCS2Q96PQ0 1159 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 ALG12Q9BV10 488 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 LMAN2LQ9H0V9 348 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 SRA1Q9HD15 236 aaKnown RBP6.84□□□□□ -1.31
LIMA1-213ENST00000552720 CA10Q9NS85 328 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms