RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 YTHDF1Q9BYJ9 559 aaKnown RBP7.65□□□□□ -1.18
VPS29-203ENST00000546588 RTN4RQ9BZR6 473 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 ZNF696Q9H7X3 374 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 LIN28AQ9H9Z2 209 aaKnown RBP7.65□□□□□ -1.18
VPS29-203ENST00000546588 SMURF2Q9HAU4 748 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 KRT84Q9NSB2 600 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 PNPLA3Q9NST1 481 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 FLRT3Q9NZU0 649 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 NTNG1Q9Y2I2 539 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 CBY1Q9Y3M2 126 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 LOC100130705A0A1B0GUX0 176 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 A0A1B0GWA3 101 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 CPSF4LA6NMK7 179 aaKnown RBP7.64□□□□□ -1.19
VPS29-203ENST00000546588 B4DXG7 233 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 NPIPB7O75200 414 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 ITGA10O75578 1167 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 REM1O75628 298 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 OR2J2O76002 312 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 ANGPTL1O95841 491 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 GASTP01350 101 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 GNAO1P09471 354 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 GABRB1P18505 474 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 PRKACGP22612 351 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 IFNGR2P38484 337 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 CLK3P49761 638 aaKnown RBP7.64□□□□□ -1.19
VPS29-203ENST00000546588 P2RX1P51575 399 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 CHN2P52757 468 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 NUP107P57740 925 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 VBP1P61758 197 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 EFNB1P98172 346 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 C17orf67Q0P5P2 114 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 PPP1R8Q12972 351 aaKnown RBP7.64□□□□□ -1.19
VPS29-203ENST00000546588 MALLQ13021 153 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 COTL1Q14019 142 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 PDK3Q15120 406 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 C3orf36Q3SXR2 165 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 IGSF11Q5DX21 431 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 SLC25A30Q5SVS4 291 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 FAM69BQ5VUD6 431 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 WBP2NLQ6ICG8 309 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 CBLN3Q6UW01 205 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 C5orf46Q6UWT4 87 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 ZNF704Q6ZNC4 412 aaPredicted RBP7.64□□□□□ -1.19
VPS29-203ENST00000546588 RASSF6Q6ZTQ3 369 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 STX12Q86Y82 276 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 CCDC71Q8IV32 467 aaPredicted RBP7.64□□□□□ -1.19
VPS29-203ENST00000546588 PRR18Q8N4B5 295 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 FADS6Q8N9I5 356 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 AQP11Q8NBQ7 271 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 SETD9Q8NE22 299 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 OR6S1Q8NH40 331 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 OR5W2Q8NH69 310 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 LILRB4Q8NHJ6 448 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 ST8SIA1Q92185 356 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 TSC22D3Q99576 134 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 DEFB126Q9BYW3 111 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 TMEM27Q9HBJ8 222 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 SLC25A19Q9HC21 320 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 P4HTMQ9NXG6 502 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 RHCGQ9UBD6 479 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 EXTL2Q9UBQ6 330 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 SLC7A7Q9UM01 511 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 ORC6Q9Y5N6 252 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 KNTC1P50748 2209 aa7.64□□□□□ -1.19
VPS29-203ENST00000546588 MAGEA13PA6NCF6 341 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 ANKUB1A6NFN9 424 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 TNFAIP8O95379 198 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 MPIG6BO95866 241 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 GKN3PP0CG01 181 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 PNMTP11086 282 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 CFL1P23528 166 aaKnown RBP7.63□□□□□ -1.19
VPS29-203ENST00000546588 MAPK3P27361 379 aaPredicted RBP7.63□□□□□ -1.19
VPS29-203ENST00000546588 RBMS1P29558 406 aaKnown RBP7.63□□□□□ -1.19
VPS29-203ENST00000546588 GGT2P36268 569 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 GDNFP39905 211 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 SLC1A3P43003 542 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 YAP1P46937 504 aaKnown RBP7.63□□□□□ -1.19
VPS29-203ENST00000546588 SLC9A3P48764 834 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 UGT2B15P54855 530 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 RPS18P62269 152 aaKnown RBP7.63□□□□□ -1.19
VPS29-203ENST00000546588 RPS4XP62701 263 aaKnown RBP7.63□□□□□ -1.19
VPS29-203ENST00000546588 CDK5Q00535 292 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 MYBPC1Q00872 1141 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 AIMP2Q13155 320 aaKnown RBP7.63□□□□□ -1.19
VPS29-203ENST00000546588 FHL1Q13642 323 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 APOFQ13790 326 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 CBFBQ13951 182 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 BCL2A1Q16548 175 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 ALG10BQ5I7T1 473 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 FGD3Q5JSP0 725 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 DCAF10Q5QP82 559 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 SLX4IPQ5VYV7 408 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 C12orf73Q69YU5 71 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 LAIR2Q6ISS4 152 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 RPL13AP3Q6NVV1 102 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 SLC30A6Q6NXT4 461 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 BORAQ6PGQ7 559 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 ZNF620Q6ZNG0 422 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 HMGN2P46Q86SG4 172 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 C8orf59Q8N0T1 100 aaPredicted RBP7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms