RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 KCNE3Q9Y6H6 103 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 TENM2Q9NT68 2774 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 NPIPB9F8W1W9 429 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 KRT33AO76009 404 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 IGHV4-38-2P0DP08 117 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 UBL4AP11441 157 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 HSD3B1P14060 373 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 HSD3B2P26439 372 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 HMOX2P30519 316 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 ZNF763Q0D2J5 394 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 REP15Q6BDI9 236 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 RETREG3Q86VR2 466 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 FAM169BQ8N8A8 192 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 POMGNT2Q8NAT1 580 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 GLB1L3Q8NCI6 653 aaPredicted RBP13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 DYDC1Q8WWB3 177 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 ST8SIA1Q92185 356 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 CHMP6Q96FZ7 201 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 MS4A4EQ96PG1 132 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 ALKBH3Q96Q83 286 aaPredicted RBP13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 TCF7L1Q9HCS4 588 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 MID1IP1Q9NPA3 183 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 INTS9Q9NV88 658 aaKnown RBP13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 DTNAQ9Y4J8 743 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 AUP1Q9Y679 476 aa13.08□□□□□ -0.32
CLSTN3-216ENST00000545663 DNAH9Q9NYC9 4486 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 TRAPPC2LH3BP13 241 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 EIF4E2O60573 245 aaKnown RBP13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 DNAJA2O60884 412 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 ULK1O75385 1050 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 IFI6P09912 130 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 ATP6V1C1P21283 382 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 ATP12AP54707 1039 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 CCL8P80075 99 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 STX3Q13277 289 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 SKP2Q13309 424 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 MPP2Q14168 576 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 CHI3L2Q15782 390 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 FIP1L1Q6UN15 594 aaKnown RBP13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 METTL6Q8TCB7 284 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 SLC25A43Q8WUT9 341 aaPredicted RBP13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 GTF3AQ92664 365 aaKnown RBP13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 TMEM45BQ96B21 275 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 CCDC106Q9BWC9 280 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 HOXD1Q9GZZ0 328 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 ACER3Q9NUN7 267 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 CHRNA9Q9UGM1 479 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 HDGFL3Q9Y3E1 203 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 RNF114Q9Y508 228 aa13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 DYNC2H1Q8NCM8 4307 aaKnown RBP13.07□□□□□ -0.32
CLSTN3-216ENST00000545663 CENPVL1A0A0U1RR11 272 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 TMEM229AB2RXF0 380 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 ZNF587BE7ETH6 402 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 DNPH1O43598 174 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 UPK3AO75631 287 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 NDUFA7O95182 113 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 HSPA4LO95757 839 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 CRYBA1P05813 215 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 FGF4P08620 206 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 UROSP10746 265 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 IMPDH2P12268 514 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 BCKDHAP12694 445 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 EFNA1P20827 205 aaPredicted RBP13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 SELENOPP49908 381 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 WDR4P57081 412 aaKnown RBP13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 ZNF154Q13106 437 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 RUSC1-AS1Q66K80 236 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 RNF165Q6ZSG1 346 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 MDP1Q86V88 176 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 OR9K2Q8NGE7 335 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 MAGEE2Q8TD90 523 aaPredicted RBP13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 MGARPQ8TDB4 240 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 MS4A3Q96HJ5 214 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 EGLN2Q96KS0 407 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 MECRQ9BV79 373 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 THAP1Q9NVV9 213 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 TMEM181Q9P2C4 612 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 DUSP13Q9UII6 198 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 PURGQ9UJV8 347 aaKnown RBP13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 POLR3HQ9Y535 204 aaPredicted RBP13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 NOTCH3Q9UM47 2321 aa13.06□□□□□ -0.32
CLSTN3-216ENST00000545663 SERTM1A2A2V5 107 aa13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 WDR91A4D1P6 747 aa13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 SHOX2O60902 331 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 PAX7P23759 505 aa13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 MTNR1AP48039 350 aa13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 ABCE1P61221 599 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 ARF1P84077 181 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 HNRNPA0Q13151 305 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 ZNF385BQ569K4 471 aa13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 SPDYAQ5MJ70 313 aa13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 PDZK1Q5T2W1 519 aa13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 PAQR6Q6TCH4 344 aa13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 ABHD12BQ7Z5M8 362 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 ADGRG3Q86Y34 549 aa13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 LRRC8CQ8TDW0 803 aa13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 ZBTB9Q96C00 473 aa13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 METTL2AQ96IZ6 378 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 GAL3ST1Q99999 423 aa13.05□□□□□ -0.32
CLSTN3-216ENST00000545663 LAT2Q9GZY6 243 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms