RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 TFPTP0C1Z6 253 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 UQCRBP14927 111 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 SLC25A16P16260 332 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 CRATP43155 626 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 SELENOPP49908 381 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 EFNA4P52798 201 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 VLDLRP98155 873 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 CHRNB3Q05901 458 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 LRRC74AQ0VAA2 488 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 FXNQ16595 210 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 TBRG1Q3YBR2 411 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 SLC9B1Q4ZJI4 515 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 LIN52Q52LA3 116 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 PDCD4Q53EL6 469 aaKnown RBP7.38□□□□□ -1.23
USP28-215ENST00000545608 HHATQ5VTY9 493 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 NXNQ6DKJ4 435 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 TMEM225Q6GV28 225 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 WBP2NLQ6ICG8 309 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 CREB3L2Q70SY1 520 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 LINGO2Q7L985 606 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 GPAT4Q86UL3 456 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 JAZF1Q86VZ6 243 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 EPHX4Q8IUS5 362 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 POMGNT2Q8NAT1 580 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 GLB1L3Q8NCI6 653 aaPredicted RBP7.38□□□□□ -1.23
USP28-215ENST00000545608 SLC38A5Q8WUX1 472 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 FAM168AQ92567 244 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 PROX1Q92786 737 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 FBXO17Q96EF6 278 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 BOD1Q96IK1 185 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 TPT1P8Q9HAU6 139 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 THAP1Q9NVV9 213 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 TMEM45AQ9NWC5 275 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 ADPRHL2Q9NX46 363 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 P2RX2Q9UBL9 471 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 ZNF443Q9Y2A4 671 aaPredicted RBP7.38□□□□□ -1.23
USP28-215ENST00000545608 POLR3KQ9Y2Y1 108 aaPredicted RBP7.38□□□□□ -1.23
USP28-215ENST00000545608 PMF1-BGLAPU3KQ54 211 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 IGHV1-18A0A0C4DH31 117 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 TMEM120BA0PK00 339 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 TRPC5OSA6NMA1 111 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 A8MVM7 634 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 NR5A2O00482 541 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 FRS3O43559 492 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 UPK3AO75631 287 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 SLC22A3O75751 556 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 KRT33AO76009 404 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 ANP32DO95626 131 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 WNT11O96014 354 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 IL6P05231 212 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 ZCCHC18P0CG32 403 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 FAM157CP0CG43 387 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 IGHV4-31P0DP07 118 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 USF1P22415 310 aaPredicted RBP7.37□□□□□ -1.23
USP28-215ENST00000545608 CRISP3P54108 245 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 DSTNP60981 165 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 COPZ1P61923 177 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 TUBA1BP68363 451 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 TUBA4AP68366 448 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 HOXC5Q00444 222 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 C1QTNF12Q5T7M4 302 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 RNF220Q5VTB9 566 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 C1orf140Q5VVS0 124 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 CYB5R2Q6BCY4 276 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 NIPAL3Q6P499 406 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 KLHL24Q6TFL4 600 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 TUBA1AQ71U36 451 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 MAVSQ7Z434 540 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 SERPINA11Q86U17 422 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 KDM8Q8N371 416 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 ARIH2OSQ8N7S6 290 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 OR9I1Q8NGQ6 314 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 OR1K1Q8NGR3 316 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 MGARPQ8TDB4 240 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 BCL2L2Q92843 193 aaPredicted RBP7.37□□□□□ -1.23
USP28-215ENST00000545608 VPS33AQ96AX1 596 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 C3orf49Q96BT1 292 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 TMEM19Q96HH6 336 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 MAELQ96JY0 434 aaKnown RBP7.37□□□□□ -1.23
USP28-215ENST00000545608 SORCS2Q96PQ0 1159 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 SLC38A2Q96QD8 506 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 OR52B2Q96RD2 323 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 SPATA9Q9BWV2 254 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 TAPBPLQ9BX59 468 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 RSPO3Q9BXY4 272 aaPredicted RBP7.37□□□□□ -1.23
USP28-215ENST00000545608 CALML5Q9NZT1 146 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 RAB21Q9UL25 225 aa7.37□□□□□ -1.23
USP28-215ENST00000545608 A0A0G2JPF8 293 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 VWC2LB2RUY7 222 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 HNRNPCL2B2RXH8 293 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 HNRNPCL3B7ZW38 293 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 FTCDNL1E5RQL4 147 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 ZNF587BE7ETH6 402 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 SLCO1B7G3V0H7 640 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 EBAG9O00559 213 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 PHF1O43189 567 aaPredicted RBP7.36□□□□□ -1.23
USP28-215ENST00000545608 HNRNPCL1O60812 293 aaKnown RBP7.36□□□□□ -1.23
USP28-215ENST00000545608 VAMP5O95183 116 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 CSF3P09919 207 aa7.36□□□□□ -1.23
USP28-215ENST00000545608 HNRNPCL4P0DMR1 293 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms