RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 WDR76Q9H967 626 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 MKKSQ9NPJ1 570 aaPredicted RBP13.75□□□□□ -0.21
USP28-214ENST00000545540 C5orf67F2Z3F1 127 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 POU3F2P20265 443 aaPredicted RBP13.74□□□□□ -0.21
USP28-214ENST00000545540 EXOSC2Q13868 293 aaKnown RBP13.74□□□□□ -0.21
USP28-214ENST00000545540 TPRA1Q86W33 373 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 OR8S1Q8NH09 359 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 DLL4Q9NR61 685 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 ENTPD2Q9Y5L3 495 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 TCRBV21S2A2A0A5A6 115 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 BTG1P62324 171 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 FAM199XQ6PEV8 388 aaPredicted RBP13.74□□□□□ -0.21
USP28-214ENST00000545540 DPY19L4Q7Z388 723 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 TMPRSS12Q86WS5 348 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 TOR1AIP2Q8NFQ8 470 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 THEM6Q8WUY1 208 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 MMABQ96EY8 250 aaPredicted RBP13.74□□□□□ -0.21
USP28-214ENST00000545540 ADAD1Q96M93 576 aaKnown RBP13.74□□□□□ -0.21
USP28-214ENST00000545540 ALG12Q9BV10 488 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 HRASLSQ9HDD0 168 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 NRIP3Q9NQ35 241 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 NUBP2Q9Y5Y2 271 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 C2orf74A8MZ97 194 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 NKX2-2O95096 273 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 HNRNPA2B1P22626 353 aaKnown RBP13.74□□□□□ -0.21
USP28-214ENST00000545540 CTXN1P60606 82 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 GUCA2AQ02747 115 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 KLF9Q13886 244 aaPredicted RBP13.74□□□□□ -0.21
USP28-214ENST00000545540 ULK3Q6PHR2 472 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 NLRC3Q7RTR2 1065 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 LIX1LQ8IVB5 337 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 DVL3Q92997 716 aaPredicted RBP13.74□□□□□ -0.21
USP28-214ENST00000545540 CTHRC1Q96CG8 243 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 HEXA-AS1Q9H8Q6 139 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 FKBP7Q9Y680 259 aa13.74□□□□□ -0.21
USP28-214ENST00000545540 ARL6IP5O75915 188 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 CT45A8P0DMV1 189 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 CT45A9P0DMV2 189 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 CDK2P24941 298 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 MMP15P51511 669 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 CCR9P51686 369 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 BLVRAP53004 296 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 ARFIP1P53367 373 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 ARPC4P59998 168 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 TSPAN5P62079 268 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 HHEXQ03014 270 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 CT45A2Q5DJT8 189 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 LIPNQ5VXI9 398 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 OR4D10Q8NGI6 311 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 KCTD12Q96CX2 325 aaKnown RBP13.73□□□□□ -0.21
USP28-214ENST00000545540 MAP3K3Q99759 626 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 RTN4RQ9BZR6 473 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 ZMAT3Q9HA38 289 aaKnown RBP13.73□□□□□ -0.21
USP28-214ENST00000545540 PCDH15Q96QU1 1955 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 ABCA7Q8IZY2 2146 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 TRAV8-7A0A075B6U6 113 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 C7orf66A4D0T2 115 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 TPD52L2O43399 206 aaKnown RBP13.73□□□□□ -0.21
USP28-214ENST00000545540 OR2T7P0C7T2 308 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 HPGDP15428 266 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 ADRA2CP18825 462 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 TAS2R43P59537 309 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 LINC00303Q3SY05 128 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 TMEM69Q5SWH9 247 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 SFRP5Q5T4F7 317 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 KDM8Q8N371 416 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 OR6N2Q8NGY6 317 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 OR2T27Q8NH04 317 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 SLC25A36Q96CQ1 311 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 GAL3ST4Q96RP7 486 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 AMELYQ99218 206 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 STACQ99469 402 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 JAM3Q9BX67 310 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 PNO1Q9NRX1 252 aaKnown RBP13.73□□□□□ -0.21
USP28-214ENST00000545540 ZNF224Q9NZL3 707 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 SATB2Q9UPW6 733 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 PCDHGA9Q9Y5G4 932 aaKnown RBP13.73□□□□□ -0.21
USP28-214ENST00000545540 IFITM5A6NNB3 132 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 RAF1P04049 648 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 CTSEP14091 401 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 PTBP1P26599 531 aaKnown RBP eCLIP13.73□□□□□ -0.21
USP28-214ENST00000545540 CTHP32929 405 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 CLPPQ16740 277 aaPredicted RBP13.73□□□□□ -0.21
USP28-214ENST00000545540 MAMSTRQ6ZN01 415 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 GLB1L2Q8IW92 636 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 CCDC28AQ8IWP9 274 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 SCARF2Q96GP6 870 aaPredicted RBP13.73□□□□□ -0.21
USP28-214ENST00000545540 OR1F2PQ96R84 312 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 OR5V1Q9UGF6 321 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 CYP8B1Q9UNU6 501 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 PCDHGA5Q9Y5G8 931 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 NPFFR2Q9Y5X5 522 aa13.73□□□□□ -0.21
USP28-214ENST00000545540 SPAG17Q6Q759 2223 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 OGG1O15527 345 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 NUDT14O95848 222 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 HLA-DQA2P01906 255 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 MAP3K8P41279 467 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 DIO1P49895 249 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 EFNB2P52799 333 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 MELKQ14680 651 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms