RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 RNF103-CHMP3A0A140T963 221 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 PRSS51A0A1B0GVH4 220 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 PRAMEF27A3QJZ7 478 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 LIPT2A6NK58 231 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 AQP7P3A6NL99 342 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 AP3D1O14617 1153 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 CELA3BP08861 270 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 IDO1P14902 403 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 S100A3P33764 101 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 SOAT1P35610 550 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 POLR2HP52434 150 aaKnown RBP11.07□□□□□ -0.64
USP28-212ENST00000544750 MAP2K6P52564 334 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 TUBA1BP68363 451 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 TUBA4AP68366 448 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 ADRM1Q16186 407 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 NXNQ6DKJ4 435 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 C1orf229Q6ZS94 237 aaPredicted RBP11.07□□□□□ -0.64
USP28-212ENST00000544750 TUBA1AQ71U36 451 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 C16orf62Q7Z3J2 963 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 ABHD12BQ7Z5M8 362 aaPredicted RBP11.07□□□□□ -0.64
USP28-212ENST00000544750 CARM1Q86X55 608 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 CDK20Q8IZL9 346 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 ARFGAP2Q8N6H7 521 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 OR4A15Q8NGL6 344 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 OR9I1Q8NGQ6 314 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 CLDND2Q8NHS1 167 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 ZNF418Q8TF45 676 aaPredicted RBP11.07□□□□□ -0.64
USP28-212ENST00000544750 CNOT9Q92600 299 aaKnown RBP11.07□□□□□ -0.64
USP28-212ENST00000544750 TMEM186Q96B77 213 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 SLC35G5Q96KT7 338 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 MAGEB18Q96M61 343 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 CCDC115Q96NT0 180 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 SDR39U1Q9NRG7 319 aaPredicted RBP11.07□□□□□ -0.64
USP28-212ENST00000544750 EXD2Q9NVH0 621 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 HIF1ANQ9NWT6 349 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 PCDHB10Q9UN67 800 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 WDR45Q9Y484 360 aa11.07□□□□□ -0.64
USP28-212ENST00000544750 IGHV2OR16-5A0A0B4J2B6 119 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 ZNF587BE7ETH6 402 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 FAAHO00519 579 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 UBDO15205 165 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 AKR7A3O95154 331 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 TGDSO95455 350 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 CPSF4O95639 269 aaKnown RBP11.06□□□□□ -0.64
USP28-212ENST00000544750 OR12D1P0DN82 309 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 HOXB1P14653 301 aaPredicted RBP11.06□□□□□ -0.64
USP28-212ENST00000544750 CBR1P16152 277 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 TACR3P29371 465 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 CDKN2CP42773 168 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 MRPL19P49406 292 aaKnown RBP11.06□□□□□ -0.64
USP28-212ENST00000544750 SELENOPP49908 381 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 IDH3AP50213 366 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 UBE2NP61088 152 aaKnown RBP11.06□□□□□ -0.64
USP28-212ENST00000544750 CEACAM7Q14002 265 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 GSTA3Q16772 222 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 MSMPQ1L6U9 139 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 PDLIM3Q53GG5 364 aaPredicted RBP11.06□□□□□ -0.64
USP28-212ENST00000544750 ELFN2Q5R3F8 820 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 ANXA8L1Q5VT79 327 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 SAXO2Q658L1 398 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 SPATA21Q7Z572 469 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 HMGN2P46Q86SG4 172 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 DYDC1Q8WWB3 177 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 ROPN1LQ96C74 230 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 ANKRD27Q96NW4 1050 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 ALKBH3Q96Q83 286 aaPredicted RBP11.06□□□□□ -0.64
USP28-212ENST00000544750 RBM4Q9BWF3 364 aaKnown RBP11.06□□□□□ -0.64
USP28-212ENST00000544750 MOV10Q9HCE1 1003 aaKnown RBP11.06□□□□□ -0.64
USP28-212ENST00000544750 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.06□□□□□ -0.64
USP28-212ENST00000544750 SLC6A13Q9NSD5 602 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 ZIM2Q9NZV7 527 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 BTNL2Q9UIR0 455 aa11.06□□□□□ -0.64
USP28-212ENST00000544750 A0A096LPE4 126 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 A0A1W2PPZ6 126 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 ZNF503-AS2A6NEH8 195 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 TMEM229AB2RXF0 380 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 RPL36A-HNRNPH2H7BZ11 118 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 TRIM77I1YAP6 450 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 WNT9BO14905 357 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 UPK3AO75631 287 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 RGS9O75916 674 aaPredicted RBP11.05□□□□□ -0.64
USP28-212ENST00000544750 AVPP01185 164 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 GPIP06744 558 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 ERCC1P07992 297 aaPredicted RBP11.05□□□□□ -0.64
USP28-212ENST00000544750 MSMBP08118 114 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 ADRA2AP08913 450 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 UQCRC2P22695 453 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 AQP5P55064 265 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 AWAT1Q58HT5 328 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 CREB3L2Q70SY1 520 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 EPHX4Q8IUS5 362 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 GLB1L3Q8NCI6 653 aaPredicted RBP11.05□□□□□ -0.64
USP28-212ENST00000544750 XAGE5Q8WWM1 108 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 RAB8BQ92930 207 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 NEURL3Q96EH8 262 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 OR52E6Q96RD3 313 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 LINC00470Q9BZP3 86 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 ZNF696Q9H7X3 374 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 TCF7L2Q9NQB0 619 aa11.05□□□□□ -0.64
USP28-212ENST00000544750 SH3PXD2BA1X283 911 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms