RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	TMEM91	Q6ZNR0	172 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	LINC00471	Q8N535	108 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	PTCHD1	Q96NR3	888 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	TGM7	Q96PF1	710 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	C12orf57	Q99622	126 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	MTHFD2L	Q9H903	347 aa	Predicted RBP	13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	BRD7	Q9NPI1	651 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	NUBP2	Q9Y5Y2	271 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	TEX13C	A0A0J9YWL9	993 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	SSX5	O60225	188 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	FCER2	P06734	321 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	GABRA5	P31644	462 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	BTC	P35070	178 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	IFNGR2	P38484	337 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	SLC16A1	P53985	500 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	EPHA4	P54764	986 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	OR1Q1	Q15612	314 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	ETFDH	Q16134	617 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	NTRK2	Q16620	822 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	ARHGAP11B	Q3KRB8	267 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	DCST2	Q5T1A1	773 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	FHL5	Q5TD97	284 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	RPTN	Q6XPR3	784 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	ASB18	Q6ZVZ8	466 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	KANSL1	Q7Z3B3	1105 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	RFLNB	Q8N5W9	214 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	CSNK1A1L	Q8N752	337 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	OR51A7	Q8NH64	312 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	OSTF1	Q92882	214 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	CCDC3	Q9BQI4	270 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	THAP7	Q9BT49	309 aa	Predicted RBP	13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	DPAGT1	Q9H3H5	408 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	ISYNA1	Q9NPH2	558 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	SLC22A7	Q9Y694	548 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	URAD	A6NGE7	173 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	B3GALT2	O43825	422 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	HRG	P04196	525 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	HCCS	P53701	268 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	OR1D5	P58170	312 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	OPCML	Q14982	345 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	NNAT	Q16517	81 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	PRAMEF8	Q5VWM4	474 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	PRAMEF7	Q5VXH5	474 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	CD200R1L	Q6Q8B3	271 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	C3P1	Q6ZMU1	363 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	ABHD13	Q7L211	337 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	CXXC5	Q7LFL8	322 aa	Known RBP	13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	DTWD2	Q8NBA8	298 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	OR2T33	Q8NG76	320 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	NEIL3	Q8TAT5	605 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	RFT1	Q96AA3	541 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	UBL7	Q96S82	380 aa	Predicted RBP	13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	RNF32	Q9H0A6	362 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	CDCP1	Q9H5V8	836 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	SUSD2	Q9UGT4	822 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	PPIE	Q9UNP9	301 aa	Known RBP	13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	EXOSC1	Q9Y3B2	195 aa	Known RBP	13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	RP1	P56715	2156 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	UNC13C	Q8NB66	2214 aa		13.74	□□□□□ -0.21
CHFR-223	ENST00000544268	LANCL1	O43813	399 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	LYPD3	O95274	346 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	ECD	O95905	644 aa	Predicted RBP	13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	GAA	P10253	952 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	LCN1	P31025	176 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	GABRA3	P34903	492 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	STAT5A	P42229	794 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	DUSP8	Q13202	625 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	FTMT	Q8N4E7	242 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	YIPF5	Q969M3	257 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	OR51V1	Q9H2C8	321 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	MEPE	Q9NQ76	525 aa	Predicted RBP	13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	SIDT1	Q9NXL6	827 aa	Known RBP	13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	IGHV5-51	A0A0C4DH38	117 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	TRDV1	A0A1B0GX56	115 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268		F8W036	122 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	DNASE2	O00115	360 aa	Predicted RBP	13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	NUDT21	O43809	227 aa	Known RBP	13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	FGF2	P09038	288 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	AHCY	P23526	432 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	ZNF322	Q6U7Q0	402 aa	Predicted RBP	13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	MCAT	Q8IVS2	390 aa	Known RBP	13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	STPG2	Q8N412	459 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	COX18	Q8N8Q8	333 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	SERINC2	Q96SA4	455 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	ZNF350	Q9GZX5	532 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	CALML5	Q9NZT1	146 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	ZNF223	Q9UK11	482 aa	Predicted RBP	13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	NPTN	Q9Y639	398 aa		13.73	□□□□□ -0.21
CHFR-223	ENST00000544268	DUXA	A6NLW8	204 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	LRRN3	E7EW58	273 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	IMPA2	O14732	288 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	TCRB	P04435	133 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	CFI	P05156	583 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	NGFR	P08138	427 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	PEPD	P12955	493 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	EPHA8	P29322	1005 aa	Predicted RBP	13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	HTR1F	P30939	366 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	FAM53B	Q14153	422 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	ERV3-1	Q14264	604 aa		13.72	□□□□□ -0.21
CHFR-223	ENST00000544268	SGCA	Q16586	387 aa		13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms