RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 CGREF1Q99674 301 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 FAM173AQ9BQD7 235 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 DOHHQ9BU89 302 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 HOXD1Q9GZZ0 328 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 NUAK2Q9H093 628 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 SERHL2Q9H4I8 314 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 SH2D2AQ9NP31 389 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 C20orf141Q9NUB4 165 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 ARL8BQ9NVJ2 186 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 GID8Q9NWU2 228 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 THUMPD1Q9NXG2 353 aaKnown RBP4.62□□□□□ -1.67
CLIP1-217ENST00000543205 PRDM4Q9UKN5 801 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 CNOT11Q9UKZ1 510 aaKnown RBP4.62□□□□□ -1.67
CLIP1-217ENST00000543205 USP22Q9UPT9 525 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 DOCK10Q96BY6 2186 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 TNRC6AQ8NDV7 1962 aaKnown RBP4.62□□□□□ -1.67
CLIP1-217ENST00000543205 COL6A6A6NMZ7 2263 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 B8ZZF3 427 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 HMGN4O00479 90 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 AIM2O14862 343 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 SUV39H1O43463 412 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 SCO2O43819 266 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 MITFO75030 526 aaPredicted RBP4.62□□□□□ -1.67
CLIP1-217ENST00000543205 ICOSLGO75144 302 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 ZNF254O75437 659 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 STX11O75558 287 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 UTS2O95399 124 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 IGKV1D-16P01601 117 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 LCATP04180 440 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 PRDX6P30041 224 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 EVI2BP34910 448 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 DNASE1L1P49184 302 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 MVDP53602 400 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 DSTNP60981 165 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 RPL15P61313 204 aaKnown RBP4.62□□□□□ -1.67
CLIP1-217ENST00000543205 FADDQ13158 208 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 SNTA1Q13424 505 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 ART3Q13508 389 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 GNA13Q14344 377 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 CAPRIN1Q14444 709 aaKnown RBP4.62□□□□□ -1.67
CLIP1-217ENST00000543205 RGNQ15493 299 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 INPP5JQ15735 1006 aaPredicted RBP4.62□□□□□ -1.67
CLIP1-217ENST00000543205 TRMT5Q32P41 509 aaKnown RBP4.62□□□□□ -1.67
CLIP1-217ENST00000543205 ARHGAP11BQ3KRB8 267 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 TBRG1Q3YBR2 411 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 GPAT3Q53EU6 434 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 RUNDC3AQ59EK9 446 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 VASNQ6EMK4 673 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 DLEU7Q6UYE1 221 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 CHDHQ8NE62 594 aaPredicted RBP4.62□□□□□ -1.67
CLIP1-217ENST00000543205 OR2M7Q8NG81 312 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 OR13C2Q8NGS9 318 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 MBD3L2Q8NHZ7 208 aaPredicted RBP4.62□□□□□ -1.67
CLIP1-217ENST00000543205 OCC1Q8TAD7 63 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 GRHL3Q8TE85 626 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 C17orf50Q8WW18 174 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 GLMPQ8WWB7 406 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 NPIPB3Q92617 1050 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 ST6GALNAC6Q969X2 333 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 RCN3Q96D15 328 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 RRNAD1Q96FB5 475 aaKnown RBP4.62□□□□□ -1.67
CLIP1-217ENST00000543205 SDF2Q99470 211 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 SH3GL1Q99961 368 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 OSBPL11Q9BXB4 747 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 ANGPTL4Q9BY76 406 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 GPR61Q9BZJ8 451 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 TBL1XR1Q9BZK7 514 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 EFCAB1Q9HAE3 211 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 SDHAF3Q9NRP4 125 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 UBQLN4Q9NRR5 601 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 AGPAT4Q9NRZ5 378 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 DEPPQ9NTK1 212 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 ING3Q9NXR8 418 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 SLC25A37Q9NYZ2 338 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 JKAMPQ9P055 326 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 VAPAQ9P0L0 249 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 P2RX2Q9UBL9 471 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 B4GALT7Q9UBV7 327 aa4.62□□□□□ -1.67
CLIP1-217ENST00000543205 BOKQ9UMX3 212 aaPredicted RBP4.62□□□□□ -1.67
CLIP1-217ENST00000543205 MGAQ8IWI9 3026 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 TEX15Q9BXT5 2789 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 TEP1Q99973 2627 aaKnown RBP4.61□□□□□ -1.67
CLIP1-217ENST00000543205 TRBV5-3A0A0A0MS03 114 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 A0A0G2JMM0 328 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 A0A1B0GWJ7 208 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 A0A1W2PPB8 328 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 A0A1W2PRS3 328 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 MFSD2BA6NFX1 497 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 NPIPB13A6NJU9 1138 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 VGLL3A8MV65 326 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 KIR3DP1A8MWS1 328 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 HNRNPCL2B2RXH8 293 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 C5orf58C9J3I9 102 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 NPIPB4C9JG80 1138 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 SLC28A2O43868 658 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 C1QCP02747 245 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 ETFAP13804 333 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 ZNF24P17028 368 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 HOXB9P17482 250 aaPredicted RBP4.61□□□□□ -1.67
CLIP1-217ENST00000543205 GPX2P18283 190 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms