RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 KCTD12Q96CX2 325 aaKnown RBP12.53□□□□□ -0.4
RTN3-210ENST00000540798 Q96M85 177 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 PILRBQ9UKJ0 227 aa12.53□□□□□ -0.4
RTN3-210ENST00000540798 MYO15AQ9UKN7 3530 aa12.52□□□□□ -0.4
RTN3-210ENST00000540798 A0A1W2PQM1 296 aa12.52□□□□□ -0.4
RTN3-210ENST00000540798 AZGP1P25311 298 aaKnown RBP12.52□□□□□ -0.4
RTN3-210ENST00000540798 ACY1Q03154 408 aa12.52□□□□□ -0.4
RTN3-210ENST00000540798 CDK5R1Q15078 307 aa12.52□□□□□ -0.4
RTN3-210ENST00000540798 ALG10Q5BKT4 473 aa12.52□□□□□ -0.4
RTN3-210ENST00000540798 GUSBP11Q6P575 273 aa12.52□□□□□ -0.4
RTN3-210ENST00000540798 CNIH2Q6PI25 160 aa12.52□□□□□ -0.4
RTN3-210ENST00000540798 ESX1Q8N693 406 aa12.52□□□□□ -0.4
RTN3-210ENST00000540798 OR51L1Q8NGJ5 315 aa12.52□□□□□ -0.4
RTN3-210ENST00000540798 ZNF563Q8TA94 476 aa12.52□□□□□ -0.4
RTN3-210ENST00000540798 TP53INP1Q96A56 240 aa12.52□□□□□ -0.4
RTN3-210ENST00000540798 SMIM19Q96E16 107 aa12.52□□□□□ -0.4
RTN3-210ENST00000540798 ATXN7L1Q9ULK2 861 aaPredicted RBP12.52□□□□□ -0.4
RTN3-210ENST00000540798 CDK2AP1O14519 115 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 SLC19A2O60779 497 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 SHC1P29353 583 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 PYCR1P32322 319 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 TPTEP56180 551 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 SCN1BQ07699 218 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 SLC3A1Q07837 685 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 TOMM34Q15785 309 aaPredicted RBP12.52□□□□□ -0.41
RTN3-210ENST00000540798 TP53I3Q53FA7 332 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 NRARPQ7Z6K4 114 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 PRSS58Q8IYP2 241 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 SLC38A9Q8NBW4 561 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 OR4D9Q8NGE8 314 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 STT3BQ8TCJ2 826 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 GHSRQ92847 366 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 RNF166Q96A37 237 aaPredicted RBP12.52□□□□□ -0.41
RTN3-210ENST00000540798 CTRCQ99895 268 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 MFRPQ9BY79 579 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 NCDNQ9UBB6 729 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 MOKQ9UQ07 419 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 GRIP1Q9Y3R0 1128 aa12.52□□□□□ -0.41
RTN3-210ENST00000540798 OR6C70A6NIJ9 312 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 BLOC1S5-TXNDC5H3BN57 136 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 HCRTR2O43614 444 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 SELENOFO60613 162 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 ICMTO60725 284 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 NAA10P41227 235 aaPredicted RBP12.51□□□□□ -0.41
RTN3-210ENST00000540798 RPS11P62280 158 aaKnown RBP eCLIP12.51□□□□□ -0.41
RTN3-210ENST00000540798 RPL18Q07020 188 aaKnown RBP12.51□□□□□ -0.41
RTN3-210ENST00000540798 ZNF385CQ66K41 422 aaPredicted RBP12.51□□□□□ -0.41
RTN3-210ENST00000540798 LEG1Q6P5S2 330 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 CELF2-AS1Q8N7Q2 184 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 SPERTQ8NA61 448 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 TTYH2Q9BSA4 534 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 PRMT8Q9NR22 394 aaPredicted RBP12.51□□□□□ -0.41
RTN3-210ENST00000540798 TRAV1-2A0A0B4J238 106 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 C4orf47A7E2U8 309 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 C17orf51A8MQB3 221 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 SNPHO15079 494 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 NPIPB7O75200 414 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 PGCP20142 388 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 EVI2BP34910 448 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 DHPSP49366 369 aaPredicted RBP12.51□□□□□ -0.41
RTN3-210ENST00000540798 SIRPAP78324 504 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 RPL22L1Q6P5R6 122 aaKnown RBP12.51□□□□□ -0.41
RTN3-210ENST00000540798 CEACAM19Q7Z692 300 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 ANKRD37Q7Z713 158 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 APCDD1LQ8NCL9 501 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 LSM14AQ8ND56 463 aaKnown RBP12.51□□□□□ -0.41
RTN3-210ENST00000540798 TSPAN32Q96QS1 320 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 PTDSS2Q9BVG9 487 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 ZCCHC4Q9H5U6 513 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 SEC16AO15027 2179 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 ADAMTS9Q9P2N4 1935 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 TIAF1O95411 115 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 ACVR1BP36896 505 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 P2RX1P51575 399 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 GBX2P52951 348 aaPredicted RBP12.51□□□□□ -0.41
RTN3-210ENST00000540798 CTXN1P60606 82 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 RNF4P78317 190 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 CBFBQ13951 182 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 ACSM3Q53FZ2 586 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 FAM27D1Q5T7N8 215 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 ALG12Q9BV10 488 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 MARCH7Q9H992 704 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 NPAP1Q9NZP6 1156 aa12.51□□□□□ -0.41
RTN3-210ENST00000540798 PCNX3Q9H6A9 2034 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 TRAV36DV7A0A075B6V5 113 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 IGHV5-10-1A0A0J9YXX1 117 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 SIGLEC6O43699 453 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 WISP1O95388 367 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 SERPINA3P01011 423 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 CCL7P80098 99 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 SELENBP1Q13228 472 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 MESTQ5EB52 335 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 PEAR1Q5VY43 1037 aaPredicted RBP12.5□□□□□ -0.41
RTN3-210ENST00000540798 PAMR1Q6UXH9 720 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 UNQ9370/PRO34162Q6UXP9 181 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 SPATC1Q76KD6 591 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 JAZF1Q86VZ6 243 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 RNF138Q8WVD3 245 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 TBL1XR1Q9BZK7 514 aa12.5□□□□□ -0.41
RTN3-210ENST00000540798 VCANP13611 3396 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms