RNA–Protein interactions for RNA: ENST00000538970.5

VAMP1-206, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best)

Gene VAMP1, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-206ENST00000538970 SH3BGRP55822 239 aaPredicted RBP10.88□□□□□ -0.67
VAMP1-206ENST00000538970 TUBA1BP68363 451 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 TUBA4AP68366 448 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 LSM11P83369 360 aaKnown RBP eCLIP10.88□□□□□ -0.67
VAMP1-206ENST00000538970 HOXC5Q00444 222 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 ROR2Q01974 943 aaKnown RBP10.88□□□□□ -0.67
VAMP1-206ENST00000538970 NAAAQ02083 359 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 EGR4Q05215 589 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 RGNQ15493 299 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 KRTAP24-1Q3LI83 254 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 C3orf36Q3SXR2 165 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 ZNF311Q5JNZ3 666 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 ANKRD16Q6P6B7 361 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 C6orf89Q6UWU4 347 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 TUBA1AQ71U36 451 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 KDM8Q8N371 416 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 BBS10Q8TAM1 723 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 GTF2H4Q92759 462 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 SLC35B4Q969S0 331 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 KTI12Q96EK9 354 aaPredicted RBP10.88□□□□□ -0.67
VAMP1-206ENST00000538970 KCNS3Q9BQ31 491 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 PIMREGQ9BSJ6 248 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 BEX2Q9BXY8 128 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 PAIP1Q9H074 479 aaKnown RBP10.88□□□□□ -0.67
VAMP1-206ENST00000538970 SEC61A2Q9H9S3 476 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 MOV10Q9HCE1 1003 aaKnown RBP10.88□□□□□ -0.67
VAMP1-206ENST00000538970 BCL2L10Q9HD36 194 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 A4GALTQ9NPC4 353 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 B3GAT1Q9P2W7 334 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 SEC14L4Q9UDX3 406 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 RCE1Q9Y256 329 aa10.88□□□□□ -0.67
VAMP1-206ENST00000538970 B9A039 149 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 RPL36A-HNRNPH2H7BZ11 118 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 UBDO15205 165 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 ZNF432O94892 652 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 IGKV3-15P01624 115 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 IGFBP5P24593 272 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 GTF2E2P29084 291 aaKnown RBP10.87□□□□□ -0.67
VAMP1-206ENST00000538970 CALCRP30988 508 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 NR4A2P43354 598 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 RPS5P46782 204 aaKnown RBP10.87□□□□□ -0.67
VAMP1-206ENST00000538970 GZMKP49863 264 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 CLDN17P56750 224 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 FADDQ13158 208 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 GGTLC2Q14390 218 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 EFNB3Q15768 340 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 ADIPOQQ15848 244 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 SLC2A7Q6PXP3 512 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 SLC46A3Q7Z3Q1 461 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 MYPOPQ86VE0 399 aaPredicted RBP10.87□□□□□ -0.67
VAMP1-206ENST00000538970 MIER2Q8N344 545 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 ARIH2OSQ8N7S6 290 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 FAM169BQ8N8A8 192 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 ANKS4BQ8N8V4 417 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 ANKK1Q8NFD2 765 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 MAL2Q969L2 176 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 SLC25A36Q96CQ1 311 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 PRR14Q9BWN1 585 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 RSPO3Q9BXY4 272 aaPredicted RBP10.87□□□□□ -0.67
VAMP1-206ENST00000538970 SHARPINQ9H0F6 387 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 PLK3Q9H4B4 646 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 C12orf10Q9HB07 376 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 MYOZ1Q9NP98 299 aaPredicted RBP10.87□□□□□ -0.67
VAMP1-206ENST00000538970 PCDHB14Q9Y5E9 798 aa10.87□□□□□ -0.67
VAMP1-206ENST00000538970 IGHV4-61A0A0C4DH41 118 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 LOC390937A0A1W2PQ73 354 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 CLIC1O00299 241 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 LMX1BO60663 402 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 SLC43A1O75387 559 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 OR4A8P0C604 315 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 HOXB1P14653 301 aaPredicted RBP10.86□□□□□ -0.67
VAMP1-206ENST00000538970 ZNF43P17038 809 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 HTR2AP28223 471 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 PRKAR1BP31321 381 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 PPOXP50336 477 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 ARF1P84077 181 aaKnown RBP10.86□□□□□ -0.67
VAMP1-206ENST00000538970 VHLLQ6RSH7 139 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 COMTD1Q86VU5 262 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 NUP37Q8NFH4 326 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 VRK1Q99986 396 aaPredicted RBP10.86□□□□□ -0.67
VAMP1-206ENST00000538970 RAD21L1Q9H4I0 556 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 NKIRAS1Q9NYS0 192 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 ALPK2Q86TB3 2170 aa10.86□□□□□ -0.67
VAMP1-206ENST00000538970 IGKV1D-42A0A075B6H8 117 aa10.85□□□□□ -0.67
VAMP1-206ENST00000538970 A0A1B0GWA3 101 aa10.85□□□□□ -0.67
VAMP1-206ENST00000538970 SLC35F4A4IF30 521 aa10.85□□□□□ -0.67
VAMP1-206ENST00000538970 ZNF503-AS2A6NEH8 195 aa10.85□□□□□ -0.67
VAMP1-206ENST00000538970 C5orf58C9J3I9 102 aa10.85□□□□□ -0.67
VAMP1-206ENST00000538970 M0R082 166 aa10.85□□□□□ -0.67
VAMP1-206ENST00000538970 AIM2O14862 343 aa10.85□□□□□ -0.67
VAMP1-206ENST00000538970 TRAF3IP2O43734 574 aaPredicted RBP10.85□□□□□ -0.67
VAMP1-206ENST00000538970 OR2T1O43869 369 aa10.85□□□□□ -0.67
VAMP1-206ENST00000538970 CELA3BP08861 270 aa10.85□□□□□ -0.67
VAMP1-206ENST00000538970 APEHP13798 732 aaKnown RBP10.85□□□□□ -0.67
VAMP1-206ENST00000538970 ETS2P15036 469 aa10.85□□□□□ -0.67
VAMP1-206ENST00000538970 CBR1P16152 277 aa10.85□□□□□ -0.67
VAMP1-206ENST00000538970 THBS2P35442 1172 aa10.85□□□□□ -0.67
VAMP1-206ENST00000538970 MRPL19P49406 292 aaKnown RBP10.85□□□□□ -0.67
VAMP1-206ENST00000538970 MAGOHP61326 146 aaKnown RBP10.85□□□□□ -0.67
VAMP1-206ENST00000538970 HGFACQ04756 655 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms