RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SFT2D3Q587I9 215 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 KLF17Q5JT82 389 aaPredicted RBP1.87□□□□□ -2.11
CD44-238ENST00000534296 COA6Q5JTJ3 125 aaKnown RBP1.87□□□□□ -2.11
CD44-238ENST00000534296 PHYHD1Q5SRE7 291 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 C1orf100Q5SVJ3 147 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 GPR157Q5UAW9 335 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 KDM7AQ6ZMT4 941 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 PEX26Q7Z412 305 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 RDH10Q8IZV5 341 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 FAM71E2Q8N5Q1 922 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 Q8N9W7 124 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 OR6X1Q8NH79 312 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 MAGEE2Q8TD90 523 aaPredicted RBP1.87□□□□□ -2.11
CD44-238ENST00000534296 TBRG4Q969Z0 631 aaKnown RBP eCLIP1.87□□□□□ -2.11
CD44-238ENST00000534296 COQ2Q96H96 371 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 ZNF285Q96NJ3 590 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 MBOAT4Q96T53 435 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 NRIP2Q9BQI9 281 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 ZNF670Q9BS34 389 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 RNF126Q9BV68 326 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 PARD6BQ9BYG5 372 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 PPA2Q9H2U2 334 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 YY1AP1Q9H869 796 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 EXD2Q9NVH0 621 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 SMOXQ9NWM0 555 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 HOXC10Q9NYD6 342 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 SUN2Q9UH99 717 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 KIF25Q9UIL4 384 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 ZNF225Q9UK10 706 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 POLDIP2Q9Y2S7 368 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 RBMY1BA6NDE4 496 aaKnown RBP1.86□□□□□ -2.11
CD44-238ENST00000534296 RBMY1EA6NEQ0 496 aaKnown RBP1.86□□□□□ -2.11
CD44-238ENST00000534296 H3BNH8 94 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 RAMP3O60896 148 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 SURF6O75683 361 aaKnown RBP1.86□□□□□ -2.11
CD44-238ENST00000534296 SLC25A27O95847 323 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 TIMP1P01033 207 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 IGHV4-34P06331 123 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 RBMY1DP0C7P1 496 aaKnown RBP1.86□□□□□ -2.11
CD44-238ENST00000534296 RBMY1A1P0DJD3 496 aaKnown RBP1.86□□□□□ -2.11
CD44-238ENST00000534296 ZNF32P17041 273 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 MDKP21741 143 aaPredicted RBP1.86□□□□□ -2.11
CD44-238ENST00000534296 QARSP47897 775 aaKnown RBP1.86□□□□□ -2.11
CD44-238ENST00000534296 GSSP48637 474 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 CRYBB1P53674 252 aaPredicted RBP1.86□□□□□ -2.11
CD44-238ENST00000534296 UGT2B15P54855 530 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 DLX1P56177 255 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 RPL23AP62750 156 aaKnown RBP1.86□□□□□ -2.11
CD44-238ENST00000534296 CKAP4Q07065 602 aaKnown RBP1.86□□□□□ -2.11
CD44-238ENST00000534296 SCRN3Q0VDG4 424 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 KLRB1Q12918 225 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 C1orf61Q13536 156 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 ARHGAP19Q14CB8 494 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 TGFBIQ15582 683 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 RFX4Q33E94 735 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 BCL7AQ4VC05 210 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 LRRC10Q5BKY1 277 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 KHDRBS2Q5VWX1 349 aaKnown RBP1.86□□□□□ -2.11
CD44-238ENST00000534296 OR2A2Q6IF42 318 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 ENPP6Q6UWR7 440 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 H2AFVQ71UI9 128 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 ZNF546Q86UE3 836 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 PAQR7Q86WK9 346 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 MKXQ8IYA7 352 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 ZNF679Q8IYX0 411 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 CNPY4Q8N129 248 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 LRRC75A-AS1Q8N1F1 130 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 OR2L13Q8N349 312 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 ZCCHC7Q8N3Z6 543 aaKnown RBP1.86□□□□□ -2.11
CD44-238ENST00000534296 OR52H1Q8NGJ2 320 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 OR13C2Q8NGS9 318 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 OR2G2Q8NGZ5 317 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 MCOLN3Q8TDD5 553 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 BLOC1S5Q8TDH9 187 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 C7orf33Q8WU49 177 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 SDR42E1Q8WUS8 393 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 SCFD1Q8WVM8 642 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 SHC3Q92529 594 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 TM4SF19Q96DZ7 209 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 CMTM7Q96FZ5 175 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 SLC41A3Q96GZ6 507 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 TPD52L3Q96J77 140 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 TSNARE1Q96NA8 513 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 PSKH2Q96QS6 385 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 TBX15Q96SF7 602 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 NRTNQ99748 197 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 KCTD14Q9BQ13 255 aaPredicted RBP1.86□□□□□ -2.11
CD44-238ENST00000534296 CLMPQ9H6B4 373 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 NMRAL1Q9HBL8 299 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 GIN1Q9NXP7 522 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 MMP17Q9ULZ9 603 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 LRRK1Q38SD2 2015 aa1.86□□□□□ -2.11
CD44-238ENST00000534296 UNC79Q9P2D8 2635 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 SMCO3A2RU48 225 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 GFYI3L273 518 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 HAS3O00219 553 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 DLGAP1O14490 977 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 XKRYO14609 159 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 FAM189A1O60320 539 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 IGHG4P01861 327 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms