RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 NCK1P16333 377 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 ZNF74Q16587 644 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 SPATS1Q496A3 300 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 TSPO2Q5TGU0 170 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 TTC33Q6PID6 262 aaPredicted RBP11.44□□□□□ -0.58
VPS28-216ENST00000533806 AAED1Q7RTV5 226 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 GPAT4Q86UL3 456 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 TMEM200AQ86VY9 491 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 RNF148Q8N7C7 305 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 LZICQ8WZA0 190 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 KISS1RQ969F8 398 aaPredicted RBP11.44□□□□□ -0.58
VPS28-216ENST00000533806 TPD52L3Q96J77 140 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 MUS81Q96NY9 551 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 CDRT15Q96T59 188 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 MAN2C1Q9NTJ4 1040 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 DCAF13Q9NV06 445 aaKnown RBP11.44□□□□□ -0.58
VPS28-216ENST00000533806 ASB6Q9NWX5 421 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 MRPL39Q9NYK5 338 aaKnown RBP11.44□□□□□ -0.58
VPS28-216ENST00000533806 ADA2Q9NZK5 511 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 C6orf203Q9P0P8 240 aaPredicted RBP11.44□□□□□ -0.58
VPS28-216ENST00000533806 EGFL7Q9UHF1 273 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 CREBBPQ92793 2442 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 ANKRD17O75179 2603 aaKnown RBP11.43□□□□□ -0.58
VPS28-216ENST00000533806 MAP1AP78559 2803 aaPredicted RBP11.43□□□□□ -0.58
VPS28-216ENST00000533806 PLPP3O14495 311 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 GSTA4O15217 222 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 TRAF3IP2O43734 574 aaPredicted RBP11.43□□□□□ -0.58
VPS28-216ENST00000533806 LYZL6O75951 148 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 ITGA5P08648 1049 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 TSPAN19P0C672 248 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 ASAH2BP0C7U1 165 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 PTNP21246 168 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 RBM34P42696 430 aaKnown RBP11.43□□□□□ -0.58
VPS28-216ENST00000533806 SELENOPP49908 381 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 MNAT1P51948 309 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 FAPQ12884 760 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 TAB1Q15750 504 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 IQCCQ4KMZ1 466 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 GLYATQ6IB77 296 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 CASP12Q6UXS9 341 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 DEF8Q6ZN54 512 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 LINGO2Q7L985 606 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 BHLHA15Q7RTS1 189 aaPredicted RBP11.43□□□□□ -0.58
VPS28-216ENST00000533806 SLC46A3Q7Z3Q1 461 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 FAM156AQ8NDB6 213 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 RNF217Q8TC41 542 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 TMEM255BQ8WV15 326 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 LIPHQ8WWY8 451 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 GEMIN6Q8WXD5 167 aaKnown RBP11.43□□□□□ -0.58
VPS28-216ENST00000533806 HSD17B8Q92506 261 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 NRGNQ92686 78 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 NSL1Q96IY1 281 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 HSH2DQ96JZ2 352 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 C7orf34Q96L11 122 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 LIME1Q9H400 295 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 TAS2R5Q9NYW4 299 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 RCE1Q9Y256 329 aa11.43□□□□□ -0.58
VPS28-216ENST00000533806 OR5H1A6NKK0 313 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 ZNF682O95780 498 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 MT-ND1P03886 318 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 HLA-DOBP13765 273 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 ZNF43P17038 809 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 CBLP22681 906 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 IL32P24001 234 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 UGT2B15P54855 530 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 TAS2R41P59536 307 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 LSM11P83369 360 aaKnown RBP eCLIP11.42□□□□□ -0.58
VPS28-216ENST00000533806 ZP4Q12836 540 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 GABRA6Q16445 453 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 IFI44LQ53G44 452 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 SAMD4BQ5PRF9 694 aaKnown RBP11.42□□□□□ -0.58
VPS28-216ENST00000533806 TIMM23BQ5SRD1 257 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 C16orf89Q6UX73 402 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 P2RY8Q86VZ1 359 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 WDFY1Q8IWB7 410 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 DEFB107AQ8IZN7 70 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 TMEM123Q8N131 208 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 UBE2J2Q8N2K1 259 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 LRRC17Q8N6Y2 441 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 FAM86B1Q8N7N1 296 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 POMGNT2Q8NAT1 580 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 RBM15BQ8NDT2 890 aaKnown RBP11.42□□□□□ -0.58
VPS28-216ENST00000533806 ZC3HAV1LQ96H79 300 aaKnown RBP11.42□□□□□ -0.58
VPS28-216ENST00000533806 PRRC1Q96M27 445 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 HS3ST6Q96QI5 342 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 TMEM204Q9BSN7 226 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 ASPNQ9BXN1 380 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 LINC00470Q9BZP3 86 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 SLCO5A1Q9H2Y9 848 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 FKRPQ9H9S5 495 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 NDE1Q9NXR1 346 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 TAS2R16Q9NYV7 291 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 ZNF229Q9UJW7 825 aa11.42□□□□□ -0.58
VPS28-216ENST00000533806 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.41□□□□□ -0.58
VPS28-216ENST00000533806 OR6C65A6NJZ3 312 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 B2RBV5 119 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 RPL36A-HNRNPH2H7BZ11 118 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 J3KTA2 159 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 CH25HO95992 272 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 SEMG1P04279 462 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms