RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 RASSF1Q9NS23 344 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 PRR14LQ5THK1 2151 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 ALPK2Q86TB3 2170 aa17.55■□□□□ 0.4
CPSF1-209ENST00000532725 POLQO75417 2590 aa17.54■□□□□ 0.4
CPSF1-209ENST00000532725 FFAR1O14842 300 aa17.54■□□□□ 0.4
CPSF1-209ENST00000532725 IFNW1P05000 195 aa17.54■□□□□ 0.4
CPSF1-209ENST00000532725 IGHV1-2P23083 117 aa17.54■□□□□ 0.4
CPSF1-209ENST00000532725 YAP1P46937 504 aaKnown RBP17.54■□□□□ 0.4
CPSF1-209ENST00000532725 ZNF74Q16587 644 aa17.54■□□□□ 0.4
CPSF1-209ENST00000532725 AAED1Q7RTV5 226 aa17.54■□□□□ 0.4
CPSF1-209ENST00000532725 C10orf53Q8N6V4 93 aa17.54■□□□□ 0.4
CPSF1-209ENST00000532725 STEAP2Q8NFT2 490 aa17.54■□□□□ 0.4
CPSF1-209ENST00000532725 LURAP1Q96LR2 239 aa17.54■□□□□ 0.4
CPSF1-209ENST00000532725 PRRC1Q96M27 445 aa17.54■□□□□ 0.4
CPSF1-209ENST00000532725 ACTR6Q9GZN1 396 aa17.54■□□□□ 0.4
CPSF1-209ENST00000532725 MRPL39Q9NYK5 338 aaKnown RBP17.54■□□□□ 0.4
CPSF1-209ENST00000532725 J3KTA2 159 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 PDLIM1O00151 329 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 PLPP3O14495 311 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 GMNNO75496 209 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 CH25HO95992 272 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 HPRP00739 348 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 ZNF43P17038 809 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 CRYGSP22914 178 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 RBM34P42696 430 aaKnown RBP17.53■□□□□ 0.4
CPSF1-209ENST00000532725 ST3GAL3Q11203 375 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 PMS2P3Q13401 168 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 TSPO2Q5TGU0 170 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 CASP12Q6UXS9 341 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 UBE2J2Q8N2K1 259 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 ZNF433Q8N7K0 673 aaPredicted RBP17.53■□□□□ 0.4
CPSF1-209ENST00000532725 TMEM255BQ8WV15 326 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 KISS1RQ969F8 398 aaPredicted RBP17.53■□□□□ 0.4
CPSF1-209ENST00000532725 S100PBPQ96BU1 408 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 HS6ST2Q96MM7 605 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 ASPNQ9BXN1 380 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 SLC7A10Q9NS82 523 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 ZNF226Q9NYT6 803 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 TAS2R1Q9NYW7 299 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 C6orf203Q9P0P8 240 aaPredicted RBP17.53■□□□□ 0.4
CPSF1-209ENST00000532725 MALT1Q9UDY8 824 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 MAGEL2Q9UJ55 1249 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 PDZD2O15018 2839 aa17.53■□□□□ 0.4
CPSF1-209ENST00000532725 PRSS23O95084 383 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 GOSR1O95249 250 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 IGF2P01344 180 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 MT-ND1P03886 318 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 COX5AP20674 150 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 UGT2B15P54855 530 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 FOXG1P55316 489 aaPredicted RBP17.52■□□□□ 0.4
CPSF1-209ENST00000532725 BHLHA15Q7RTS1 189 aaPredicted RBP17.52■□□□□ 0.4
CPSF1-209ENST00000532725 ARHGAP24Q8N264 748 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 LRRC17Q8N6Y2 441 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 FAM86B1Q8N7N1 296 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 OR5J2Q8NH18 312 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 TMEM239Q8WW34 195 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 ZC3HAV1LQ96H79 300 aaKnown RBP17.52■□□□□ 0.4
CPSF1-209ENST00000532725 C7orf34Q96L11 122 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 USB1Q9BQ65 265 aaKnown RBP17.52■□□□□ 0.4
CPSF1-209ENST00000532725 C1orf21Q9H246 121 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 FKRPQ9H9S5 495 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 MAN2C1Q9NTJ4 1040 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 ASB6Q9NWX5 421 aa17.52■□□□□ 0.4
CPSF1-209ENST00000532725 SAMD4AQ9UPU9 718 aaKnown RBP17.52■□□□□ 0.4
CPSF1-209ENST00000532725 DEFB108AA8MXU0 73 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 KPNA4O00629 521 aaPredicted RBP17.51■□□□□ 0.39
CPSF1-209ENST00000532725 ARPC2O15144 300 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 SIAH2O43255 324 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 LYZL6O75951 148 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 ZNF432O94892 652 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 HRGP04196 525 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 ASAH2BP0C7U1 165 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 HLA-DOBP13765 273 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 NQO1P15559 274 aaKnown RBP17.51■□□□□ 0.39
CPSF1-209ENST00000532725 IL32P24001 234 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 IFNA8P32881 189 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 SELENOPP49908 381 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 CLDN17P56750 224 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 FAPQ12884 760 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 FOXD4Q12950 439 aaPredicted RBP17.51■□□□□ 0.39
CPSF1-209ENST00000532725 SLC46A3Q7Z3Q1 461 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 TMEM200AQ86VY9 491 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 PFN4Q8NHR9 129 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 HSD17B8Q92506 261 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 FNDC11Q9BVV2 318 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 POLDIP3Q9BY77 421 aaKnown RBP17.51■□□□□ 0.39
CPSF1-209ENST00000532725 SLCO5A1Q9H2Y9 848 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 NANSQ9NR45 359 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 C20orf141Q9NUB4 165 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 TAS2R5Q9NYW4 299 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 RHCGQ9UBD6 479 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 ZNF229Q9UJW7 825 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 ENPP4Q9Y6X5 453 aa17.51■□□□□ 0.39
CPSF1-209ENST00000532725 KLF4O43474 513 aa17.5■□□□□ 0.39
CPSF1-209ENST00000532725 TRAF3IP2O43734 574 aaPredicted RBP17.5■□□□□ 0.39
CPSF1-209ENST00000532725 LSM11P83369 360 aaKnown RBP eCLIP17.5■□□□□ 0.398e-7■■■□□ 17
CPSF1-209ENST00000532725 PUDPQ08623 228 aa17.5■□□□□ 0.39
CPSF1-209ENST00000532725 ZP4Q12836 540 aa17.5■□□□□ 0.39
CPSF1-209ENST00000532725 C1DQ13901 141 aaKnown RBP17.5■□□□□ 0.39
CPSF1-209ENST00000532725 IQCCQ4KMZ1 466 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms