RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 MXRA7P84157 204 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 ITGADQ13349 1161 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 KPNB1Q14974 876 aaKnown RBP13.3□□□□□ -0.28
CPSF1-208ENST00000532560 FXNQ16595 210 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 SAMD4BQ5PRF9 694 aaKnown RBP13.3□□□□□ -0.28
CPSF1-208ENST00000532560 SFRP5Q5T4F7 317 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 FBXW9Q5XUX1 488 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 TMEM225Q6GV28 225 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 C16orf89Q6UX73 402 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.3□□□□□ -0.28
CPSF1-208ENST00000532560 ZIC4Q8N9L1 334 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 SCAIQ8N9R8 606 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 ZNF417Q8TAU3 575 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 GEMIN6Q8WXD5 167 aaKnown RBP13.3□□□□□ -0.28
CPSF1-208ENST00000532560 DNAJC9Q8WXX5 260 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 FAM162AQ96A26 154 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 ZNF385AQ96PM9 386 aaKnown RBP13.3□□□□□ -0.28
CPSF1-208ENST00000532560 ZNF587Q96SQ5 575 aaPredicted RBP13.3□□□□□ -0.28
CPSF1-208ENST00000532560 ACTR6Q9GZN1 396 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 C6orf203Q9P0P8 240 aaPredicted RBP13.3□□□□□ -0.28
CPSF1-208ENST00000532560 SEC14L4Q9UDX3 406 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 CASKO14936 926 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 ZNF682O95780 498 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 SERPINA1P01009 418 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 THRBP10828 461 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 PTNP21246 168 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 IL32P24001 234 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 RBM34P42696 430 aaKnown RBP13.29□□□□□ -0.28
CPSF1-208ENST00000532560 SLC25A3Q00325 362 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 RCN1Q15293 331 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 SPATS1Q496A3 300 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 TTC33Q6PID6 262 aaPredicted RBP13.29□□□□□ -0.28
CPSF1-208ENST00000532560 CREB3L2Q70SY1 520 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 H1FNTQ75WM6 255 aaPredicted RBP13.29□□□□□ -0.28
CPSF1-208ENST00000532560 VTCN1Q7Z7D3 282 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 KISS1RQ969F8 398 aaPredicted RBP13.29□□□□□ -0.28
CPSF1-208ENST00000532560 HSH2DQ96JZ2 352 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 PRRC1Q96M27 445 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 ZNF570Q96NI8 536 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 MOGAT1Q96PD6 335 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 USB1Q9BQ65 265 aaKnown RBP13.29□□□□□ -0.28
CPSF1-208ENST00000532560 PRSS27Q9BQR3 290 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 ASPNQ9BXN1 380 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 CLEC4MQ9H2X3 399 aaPredicted RBP13.29□□□□□ -0.28
CPSF1-208ENST00000532560 VCX3BQ9H321 246 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 CXorf56Q9H5V9 222 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 B3GAT1Q9P2W7 334 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 LRCH1Q9Y2L9 728 aa13.29□□□□□ -0.28
CPSF1-208ENST00000532560 LOC102725191A0A1B0GVB3 256 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 DEFB108AA8MXU0 73 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 HRGP04196 525 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 IFNW1P05000 195 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 THBDP07204 575 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 NCK1P16333 377 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 IGHV1-2P23083 117 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 IFI44LQ53G44 452 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 ANKRD34AQ69YU3 496 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 C22orf34Q6ZV56 151 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 BHLHA15Q7RTS1 189 aaPredicted RBP13.28□□□□□ -0.28
CPSF1-208ENST00000532560 AAED1Q7RTV5 226 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 EPHX4Q8IUS5 362 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 DEFB107AQ8IZN7 70 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 UBE2J2Q8N2K1 259 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 RNF148Q8N7C7 305 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 S100PBPQ96BU1 408 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 OXGR1Q96P68 337 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 POLDIP3Q9BY77 421 aaKnown RBP13.28□□□□□ -0.28
CPSF1-208ENST00000532560 FKRPQ9H9S5 495 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 ASB6Q9NWX5 421 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 MRPL39Q9NYK5 338 aaKnown RBP13.28□□□□□ -0.28
CPSF1-208ENST00000532560 CD300AQ9UGN4 299 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 EGFL7Q9UHF1 273 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 MAGEL2Q9UJ55 1249 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 RIMS3Q9UJD0 308 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 RPS6KA6Q9UK32 745 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 PRPF19Q9UMS4 504 aaKnown RBP13.28□□□□□ -0.28
CPSF1-208ENST00000532560 RCE1Q9Y256 329 aa13.28□□□□□ -0.28
CPSF1-208ENST00000532560 PDLIM1O00151 329 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 SIAH2O43255 324 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 GMNNO75496 209 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 LYZL6O75951 148 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 IGF2P01344 180 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 IGHV3-9P01782 118 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 RPSAP08865 295 aaKnown RBP13.27□□□□□ -0.29
CPSF1-208ENST00000532560 ZNF43P17038 809 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 CBLP22681 906 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 LTBQ06643 244 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 PIN1Q13526 163 aaPredicted RBP13.27□□□□□ -0.29
CPSF1-208ENST00000532560 BLMHQ13867 455 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 ZNF74Q16587 644 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 GLYATQ6IB77 296 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 OFCC1Q8IZS5 231 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 C10orf53Q8N6V4 93 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 ZNF433Q8N7K0 673 aaPredicted RBP13.27□□□□□ -0.29
CPSF1-208ENST00000532560 ZC3HAV1LQ96H79 300 aaKnown RBP13.27□□□□□ -0.29
CPSF1-208ENST00000532560 CDRT15Q96T59 188 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 THTPAQ9BU02 230 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 AMBRA1Q9C0C7 1298 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 SLCO5A1Q9H2Y9 848 aa13.27□□□□□ -0.29
CPSF1-208ENST00000532560 GORASP2Q9H8Y8 452 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms