RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	RBFOX1	Q9NWB1	397 aa	Known RBP	5.1	□□□□□ -1.59
CD44-231	ENST00000531110	MRPL22	Q9NWU5	206 aa	Known RBP	5.1	□□□□□ -1.59
CD44-231	ENST00000531110	RIMBP3	Q9UFD9	1639 aa		5.1	□□□□□ -1.59
CD44-231	ENST00000531110	PRG3	Q9Y2Y8	225 aa	Predicted RBP	5.1	□□□□□ -1.59
CD44-231	ENST00000531110	PCDHGA5	Q9Y5G8	931 aa		5.1	□□□□□ -1.59
CD44-231	ENST00000531110	KLK4	Q9Y5K2	254 aa		5.1	□□□□□ -1.59
CD44-231	ENST00000531110	CAMTA1	Q9Y6Y1	1673 aa		5.1	□□□□□ -1.59
CD44-231	ENST00000531110		U3KQV3	271 aa		5.1	□□□□□ -1.59
CD44-231	ENST00000531110	DENND4A	Q7Z401	1863 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	SCN11A	Q9UI33	1791 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	C4A	P0C0L4	1744 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	C4B	P0C0L5	1744 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	USP6	P35125	1406 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	ADGRF5	Q8IZF2	1346 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-231	ENST00000531110	TMEM72	A0PK05	275 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	OR6C68	A6NDL8	312 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	NKX6-3	A6NJ46	265 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	DUXA	A6NLW8	204 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110		B4DGG1	531 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110		M0R233	179 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	FOXE1	O00358	373 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-231	ENST00000531110	SLC33A1	O00400	549 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-231	ENST00000531110	MBTPS2	O43462	519 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	KDELR3	O43731	214 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	WBP4	O75554	376 aa	Known RBP	5.09	□□□□□ -1.59
CD44-231	ENST00000531110	ERAL1	O75616	437 aa	Known RBP	5.09	□□□□□ -1.59
CD44-231	ENST00000531110	RP2	O75695	350 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	DFFB	O76075	338 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	KDM4B	O94953	1096 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	MT-ND2	P03891	347 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	HTR1A	P08908	422 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	C1GALT1C1L	P0DN25	315 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	THRB	P10828	461 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	CETP	P11597	493 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	SDC1	P18827	310 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	TSPAN8	P19075	237 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	SRM	P19623	302 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	GLRA1	P23415	457 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	KDELR1	P24390	212 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	TLX1	P31314	330 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-231	ENST00000531110	FMO3	P31513	532 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	OTX2	P32243	289 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	SHMT2	P34897	504 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	MATK	P42679	507 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	KCNJ1	P48048	391 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	TDGF1P3	P51864	188 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	SMS	P52788	366 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	PGGT1B	P53609	377 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	TMEM33	P57088	247 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	SELENOT	P62341	195 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	CCL7	P80098	99 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	IL5RA	Q01344	420 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	CHRNB3	Q05901	458 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	MADCAM1	Q13477	382 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	GAMT	Q14353	236 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	ABRAXAS2	Q15018	415 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	PTGES3	Q15185	160 aa	Known RBP	5.09	□□□□□ -1.59
CD44-231	ENST00000531110	KCTD19	Q17RG1	926 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-231	ENST00000531110	TMEM241	Q24JQ0	296 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	TEX44	Q53QW1	395 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	CYBRD1	Q53TN4	286 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	ACAD10	Q6JQN1	1059 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	FAM198B	Q6UWH4	519 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	CASP12	Q6UXS9	341 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	FBXW12	Q6X9E4	464 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	C3P1	Q6ZMU1	363 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	LINC00696	Q6ZRV3	163 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	SLC35D2	Q76EJ3	337 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	TECPR1	Q7Z6L1	1165 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	NAA40	Q86UY6	237 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	WDR5B	Q86VZ2	330 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	CYP4Z1	Q86W10	505 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	NUDT13	Q86X67	352 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	RNF130	Q86XS8	419 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	CACUL1	Q86Y37	369 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	FUNDC1	Q8IVP5	155 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	TUSC5	Q8IXB3	177 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	DAW1	Q8N136	415 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	ZCCHC9	Q8N567	271 aa	Known RBP	5.09	□□□□□ -1.59
CD44-231	ENST00000531110	LRRC52	Q8N7C0	313 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	ZNF557	Q8N988	423 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-231	ENST00000531110	LMNTD1	Q8N9Z9	388 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	KCTD6	Q8NC69	237 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	OR5T3	Q8NGG3	340 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	OR9A4	Q8NGU2	314 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	TMEM163	Q8TC26	289 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	SPPL2B	Q8TCT7	592 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	RNASEH2C	Q8TDP1	164 aa	Known RBP	5.09	□□□□□ -1.59
CD44-231	ENST00000531110	ACOT12	Q8WYK0	555 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	TFG	Q92734	400 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-231	ENST00000531110	SEMA4D	Q92854	862 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	SLC35C1	Q96A29	364 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	SLC25A28	Q96A46	364 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	MRPS24	Q96EL2	167 aa	Known RBP	5.09	□□□□□ -1.59
CD44-231	ENST00000531110	PHYHIPL	Q96FC7	376 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	C4orf36	Q96KX1	117 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	FCRL1	Q96LA6	429 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	OR2M2	Q96R28	347 aa		5.09	□□□□□ -1.59
CD44-231	ENST00000531110	CNN2	Q99439	309 aa	Known RBP	5.09	□□□□□ -1.59

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