RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TRIP10Q15642 601 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 SNCBQ16143 134 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 RFX4Q33E94 735 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 LPCAT4Q643R3 524 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 KDM4DQ6B0I6 523 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 FAHD1Q6P587 224 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 TBPL2Q6SJ96 375 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 WDR88Q6ZMY6 472 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 YRDCQ86U90 279 aaKnown RBP6.65□□□□□ -1.34
CD44-228ENST00000528455 NRMQ8IXM6 262 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 OR10G2Q8NGC3 310 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 MFSD8Q8NHS3 518 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 PIGXQ8TBF5 258 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 TMEM255BQ8WV15 326 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 NRG4Q8WWG1 115 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 BPIFA2Q96DR5 249 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 CCDC140Q96MF4 163 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 RDH12Q96NR8 316 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 SLC29A1Q99808 456 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 CIB1Q99828 191 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 GABARAPL1Q9H0R8 117 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 VCXQ9H320 206 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 ZNF703Q9H7S9 590 aaPredicted RBP6.65□□□□□ -1.34
CD44-228ENST00000528455 MEPEQ9NQ76 525 aaPredicted RBP6.65□□□□□ -1.34
CD44-228ENST00000528455 PAQR5Q9NXK6 330 aaPredicted RBP6.65□□□□□ -1.34
CD44-228ENST00000528455 ENOPH1Q9UHY7 261 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 HDGFL3Q9Y3E1 203 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 RP1L1Q8IWN7 2480 aaPredicted RBP6.65□□□□□ -1.35
CD44-228ENST00000528455 GTF3C1Q12789 2109 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 IGKV1D-42A0A075B6H8 117 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 TRGV5A0A0B4J1U4 118 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 TMEM72A0PK05 275 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 SAC3D1A6NKF1 404 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 PDLIM1O00151 329 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 SOCS2O14508 198 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 DNPH1O43598 174 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 EIF1BO60739 113 aaKnown RBP6.64□□□□□ -1.35
CD44-228ENST00000528455 FZD7O75084 574 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 RCBTB2O95199 551 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 ADAP00813 363 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 HIST1H2ABP04908 130 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 THBDP07204 575 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 TSPAN19P0C672 248 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 IFI30P13284 250 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 RAC2P15153 192 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 ZNF24P17028 368 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 FUT1P19526 365 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 FPR3P25089 353 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 RAD23AP54725 363 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 UGT2B15P54855 530 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 MLLT10P55197 1068 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 CARD18P57730 90 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 RAC3P60763 192 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 ALDH6A1Q02252 535 aaKnown RBP6.64□□□□□ -1.35
CD44-228ENST00000528455 TAF11Q15544 211 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 IGFBP7Q16270 282 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 LRRC36Q1X8D7 754 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 TMEM176BQ3YBM2 270 aaPredicted RBP6.64□□□□□ -1.35
CD44-228ENST00000528455 ZBED5Q49AG3 693 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 OTUD3Q5T2D3 398 aaPredicted RBP6.64□□□□□ -1.35
CD44-228ENST00000528455 FAM69AQ5T7M9 428 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 C1orf140Q5VVS0 124 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 ZNF324BQ6AW86 544 aaPredicted RBP6.64□□□□□ -1.35
CD44-228ENST00000528455 VASNQ6EMK4 673 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 C3orf33Q6P1S2 294 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 PGBD2Q6P3X8 592 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 TMPPEQ6ZT21 453 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 RASSF6Q6ZTQ3 369 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 ESPNLQ6ZVH7 1005 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 HIST3H2AQ7L7L0 130 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 SLC43A2Q8N370 569 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 PARP8Q8N3A8 854 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 LILRB2Q8N423 598 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 CBR4Q8N4T8 237 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 ATG16L2Q8NAA4 619 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 AQP11Q8NBQ7 271 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 NEIL3Q8TAT5 605 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 MAGEE2Q8TD90 523 aaPredicted RBP6.64□□□□□ -1.35
CD44-228ENST00000528455 HIST1H2ACQ93077 130 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 ABTB1Q969K4 478 aaPredicted RBP6.64□□□□□ -1.35
CD44-228ENST00000528455 TAAR8Q969N4 342 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 KTI12Q96EK9 354 aaPredicted RBP6.64□□□□□ -1.35
CD44-228ENST00000528455 SGTBQ96EQ0 304 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 C1orf159Q96HA4 380 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 TAAR6Q96RI8 345 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 BARD1Q99728 777 aaKnown RBP6.64□□□□□ -1.35
CD44-228ENST00000528455 NPAS1Q99742 590 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 UCK2Q9BZX2 261 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 DEFB127Q9H1M4 99 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 LDAHQ9H6V9 325 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 SMURF2Q9HAU4 748 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 TIGARQ9NQ88 270 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 NANSQ9NR45 359 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 IL20Q9NYY1 176 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 ZNF229Q9UJW7 825 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 POFUT2Q9Y2G5 429 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 RPH3AQ9Y2J0 694 aaPredicted RBP6.64□□□□□ -1.35
CD44-228ENST00000528455 ORC6Q9Y5N6 252 aa6.64□□□□□ -1.35
CD44-228ENST00000528455 MAGED1Q9Y5V3 778 aaPredicted RBP6.64□□□□□ -1.35
CD44-228ENST00000528455 LOC102725191A0A1B0GVB3 256 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms