RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 LCN1P1Q5VSP4 162 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 VASNQ6EMK4 673 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 LEG1Q6P5S2 330 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 GHDCQ8N2G8 530 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 MFSD4AQ8N468 514 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 POMGNT2Q8NAT1 580 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 S100ZQ8WXG8 99 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 DNAJA3Q96EY1 480 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 CDC6Q99741 560 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 METTL7AQ9H8H3 244 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 NCDNQ9UBB6 729 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 CHCHD2Q9Y6H1 151 aaPredicted RBP18.73■□□□□ 0.59
VPS28-209ENST00000528142 KIF26BQ2KJY2 2108 aa18.73■□□□□ 0.59
VPS28-209ENST00000528142 C9orf172C9J069 976 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 J3QRK9 145 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 SLC30A4O14863 429 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 DXOO77932 396 aaKnown RBP18.72■□□□□ 0.59
VPS28-209ENST00000528142 RAB40ALP0C0E4 278 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 RPS19P39019 145 aaKnown RBP18.72■□□□□ 0.59
VPS28-209ENST00000528142 ZNF846Q147U1 533 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 JAZF1Q86VZ6 243 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 ATP6V1C2Q8NEY4 427 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 OR5J2Q8NH18 312 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 OR6S1Q8NH40 331 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 CT55Q8WUE5 264 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 SLC25A36Q96CQ1 311 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 C1GALT1C1Q96EU7 318 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 TM9SF2Q99805 663 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 TOR4AQ9NXH8 423 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 GRHPRQ9UBQ7 328 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 TCFL5Q9UL49 500 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 NSG1A0A0A6YYJ2 146 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 A0A1B0GVG6 124 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 FTCDNL1E5RQL4 147 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 JMJD7P0C870 316 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 BMP4P12644 408 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 CELP19835 753 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 FABP5Q01469 135 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 GPR50Q13585 617 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.72■□□□□ 0.59
VPS28-209ENST00000528142 MESTQ5EB52 335 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 SLC25A53Q5H9E4 307 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 LINC01590Q5TEZ4 76 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 GPR139Q6DWJ6 353 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 PPP1R32Q7Z5V6 425 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 CNN2Q99439 309 aaKnown RBP18.72■□□□□ 0.59
VPS28-209ENST00000528142 ZNF160Q9HCG1 818 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 CPNE5Q9HCH3 593 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 HMG20AQ9NP66 347 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 ZNF346Q9UL40 294 aaKnown RBP18.72■□□□□ 0.59
VPS28-209ENST00000528142 ZMIZ1Q9ULJ6 1067 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 NOX1Q9Y5S8 564 aa18.72■□□□□ 0.59
VPS28-209ENST00000528142 SIRT4Q9Y6E7 314 aaPredicted RBP18.72■□□□□ 0.59
VPS28-209ENST00000528142 TRDV1A0A1B0GX56 115 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 OR2T1O43869 369 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 AHSA1O95433 338 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 MT-CO3P00414 261 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 OR2T7P0C7T2 308 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 TCN2P20062 427 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 GRPRP30550 384 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 FGF9P31371 208 aaPredicted RBP18.71■□□□□ 0.59
VPS28-209ENST00000528142 FOXF1Q12946 379 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 CRTC2Q53ET0 693 aaPredicted RBP18.71■□□□□ 0.59
VPS28-209ENST00000528142 SSX6Q7RTT6 188 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 ARMC10Q8N2F6 343 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 ARIH2OSQ8N7S6 290 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 OR2T27Q8NH04 317 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 PRRX2Q99811 253 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 WDR12Q9GZL7 423 aaKnown RBP18.71■□□□□ 0.59
VPS28-209ENST00000528142 PALMDQ9NP74 551 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 WDR70Q9NW82 654 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 VDAC3Q9Y277 283 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 PCNX3Q9H6A9 2034 aa18.71■□□□□ 0.59
VPS28-209ENST00000528142 TP53I11O14683 189 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 SERPINI2O75830 405 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 GLCEO94923 617 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 MT-ND5P03915 603 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 HCCSP53701 268 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 RPS18P62269 152 aaKnown RBP18.7■□□□□ 0.58
VPS28-209ENST00000528142 KRR1Q13601 381 aaKnown RBP18.7■□□□□ 0.58
VPS28-209ENST00000528142 C22orf42Q6IC83 251 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 OPN5Q6U736 354 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 OR2M3Q8NG83 312 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 FRMD6Q96NE9 622 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 RPRD1BQ9NQG5 326 aaKnown RBP18.7■□□□□ 0.58
VPS28-209ENST00000528142 PCDHGA1Q9Y5H4 931 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 PLPP3O14495 311 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 ZNF208O43345 1280 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 SOX6P35712 828 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 SNTA1Q13424 505 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 INPP5JQ15735 1006 aaPredicted RBP18.7■□□□□ 0.58
VPS28-209ENST00000528142 PLPPR5Q32ZL2 321 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 TMEM81Q6P7N7 255 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 BTLAQ7Z6A9 289 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 PIP4P1Q86T03 277 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 GPALPP1Q8IXQ4 340 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 SLC35F2Q8IXU6 374 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 RFLNBQ8N5W9 214 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 C4orf36Q96KX1 117 aa18.7■□□□□ 0.58
VPS28-209ENST00000528142 MRGPRX4Q96LA9 322 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms