RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PLGLB1Q02325 96 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 ZNF91Q05481 1191 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 ZNF766Q5HY98 468 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 PLBD1Q6P4A8 553 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 CCDC81Q6ZN84 652 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 PRSS48Q7RTY5 328 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 TMEM178AQ8NBL3 297 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 OR4K13Q8NH42 304 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 SLC39A7Q92504 469 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 SCMH1Q96GD3 660 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 GRHPRQ9UBQ7 328 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.92■□□□□ 0.623e-6■□□□□ 9.1
VPS28-208ENST00000527797 TRAPPC4Q9Y296 219 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 SSUH2Q9Y2M2 353 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 A0A1W2PNR3 127 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 FAM183AA6NL82 134 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 GJE1A6NN92 205 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 FZD7O75084 574 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 CDK1P06493 297 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 ACVR2AP27037 513 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 SHC1P29353 583 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 MEOX1P50221 254 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 TNFSF10P50591 281 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 CDH11P55287 796 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 B3GALT5-AS1P59052 145 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.91■□□□□ 0.62
VPS28-208ENST00000527797 ST3GAL4Q11206 333 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 WIPI1Q5MNZ9 446 aaPredicted RBP18.91■□□□□ 0.62
VPS28-208ENST00000527797 GPR139Q6DWJ6 353 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 GID4Q8IVV7 300 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 SLC37A3Q8NCC5 494 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 TTTY12Q9BZ98 90 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 ZNF703Q9H7S9 590 aaPredicted RBP18.91■□□□□ 0.62
VPS28-208ENST00000527797 CHST11Q9NPF2 352 aa18.91■□□□□ 0.62
VPS28-208ENST00000527797 EML6Q6ZMW3 1958 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 TEX13CA0A0J9YWL9 993 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 A6NHS1 94 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 TXNDC12O95881 172 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 MT-ND2P03891 347 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 SDHAP31040 664 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 OR2B6P58173 313 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 ZP4Q12836 540 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 CRMP1Q14194 572 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 EMC4Q5J8M3 183 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 FAM122BQ7Z309 247 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 SVOPQ8N4V2 548 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 BBS1Q8NFJ9 593 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 PTP4A1Q93096 173 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 Q96M85 177 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 SFXN2Q96NB2 322 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 CCDC86Q9H6F5 360 aaKnown RBP18.9■□□□□ 0.62
VPS28-208ENST00000527797 DKK4Q9UBT3 224 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 B3GALT5Q9Y2C3 310 aa18.9■□□□□ 0.62
VPS28-208ENST00000527797 MED13Q9UHV7 2174 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 SULT2B1O00204 365 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 HPNP05981 417 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 STSP08842 583 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 RFC3P40938 356 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 ALDH3B2P48448 385 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 SLC35A1P78382 337 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 TLE3Q04726 772 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 PUDPQ08623 228 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 C19orf57Q0VDD7 668 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 KLHL22Q53GT1 634 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 TMPPEQ6ZT21 453 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 JAZF1Q86VZ6 243 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 SPACA3Q8IXA5 215 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 CYB561A3Q8NBI2 242 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 LSM14AQ8ND56 463 aaKnown RBP18.89■□□□□ 0.62
VPS28-208ENST00000527797 SDR9C7Q8NEX9 313 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 SMPDL3BQ92485 455 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 MIB2Q96AX9 1013 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 RASD2Q96D21 266 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 TSPAN32Q96QS1 320 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 SIGLEC11Q96RL6 698 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 SMAD5Q99717 465 aaKnown RBP18.89■□□□□ 0.62
VPS28-208ENST00000527797 MED20Q9H944 212 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 ZNF346Q9UL40 294 aaKnown RBP18.89■□□□□ 0.62
VPS28-208ENST00000527797 PCDHGB1Q9Y5G3 927 aa18.89■□□□□ 0.62
VPS28-208ENST00000527797 IRGMA1A4Y4 181 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 MS4A18H0YCH9 400 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 LINC01387J3KSC0 135 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 AKR7A3O95154 331 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 PMS2P2O95744 297 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 HTR1FP30939 366 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 MTNR1AP48039 350 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 DIO1P49895 249 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 NEDD8Q15843 81 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 HYAL4Q2M3T9 481 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 MS4A18Q3C1V0 323 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 NIPAL3Q6P499 406 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 MEPCEQ7L2J0 689 aaKnown RBP18.89■□□□□ 0.61
VPS28-208ENST00000527797 ZFP62Q8NB50 900 aaPredicted RBP18.89■□□□□ 0.61
VPS28-208ENST00000527797 RNFT2Q96EX2 444 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 HCAR1Q9BXC0 346 aa18.89■□□□□ 0.61
VPS28-208ENST00000527797 MRPS18AQ9NVS2 196 aaKnown RBP18.89■□□□□ 0.61
VPS28-208ENST00000527797 A0A1W2PRG6 482 aa18.88■□□□□ 0.61
VPS28-208ENST00000527797 FAM166BA8MTA8 275 aa18.88■□□□□ 0.61
VPS28-208ENST00000527797 SERPINI2O75830 405 aa18.88■□□□□ 0.61
VPS28-208ENST00000527797 GLSO94925 669 aaPredicted RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms