RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 CD247P20963 164 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 SH3BGRP55822 239 aaPredicted RBP18.12■□□□□ 0.49
VPS28-206ENST00000526734 RIPPLY3P57055 190 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 RPS4XP62701 263 aaKnown RBP18.12■□□□□ 0.49
VPS28-206ENST00000526734 RABL3Q5HYI8 236 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 Q5PR19 223 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 WFDC11Q8NEX6 87 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 OR52N5Q8NH56 324 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 RP9Q8TA86 221 aaKnown RBP18.12■□□□□ 0.49
VPS28-206ENST00000526734 ZNF417Q8TAU3 575 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 C10orf82Q8WW14 230 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 TAMM41Q96BW9 452 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 SLC41A3Q96GZ6 507 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 ZNF587Q96SQ5 575 aaPredicted RBP18.12■□□□□ 0.49
VPS28-206ENST00000526734 ASPNQ9BXN1 380 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 PCDHAC1Q9H158 963 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 MOV10Q9HCE1 1003 aaKnown RBP18.12■□□□□ 0.49
VPS28-206ENST00000526734 SLC17A5Q9NRA2 495 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 ZNF701Q9NV72 531 aaPredicted RBP18.12■□□□□ 0.49
VPS28-206ENST00000526734 FAIMQ9NVQ4 179 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 BAG5Q9UL15 447 aa18.12■□□□□ 0.49
VPS28-206ENST00000526734 MED13LQ71F56 2210 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 TPST2O60704 377 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 WNT11O96014 354 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 MT-ATP6P00846 226 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 GRPRP30550 384 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 CDH12P55289 794 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 C1DQ13901 141 aaKnown RBP18.11■□□□□ 0.49
VPS28-206ENST00000526734 NIPAL3Q6P499 406 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 KRTAP1-3Q8IUG1 177 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 OR6T1Q8NGN1 323 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 LILRB1Q8NHL6 650 aaPredicted RBP18.11■□□□□ 0.49
VPS28-206ENST00000526734 PROX1Q92786 737 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 MPP4Q96JB8 637 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 PRR14Q9BWN1 585 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 DLL4Q9NR61 685 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 NPAP1Q9NZP6 1156 aa18.11■□□□□ 0.49
VPS28-206ENST00000526734 LOC100653049A0A140TA62 436 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 TRAPPC13A5PLN9 417 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 ABCD4O14678 606 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 SLC43A1O75387 559 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 KRT34O76011 436 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 PTH2RP49190 550 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 SELENOPP49908 381 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 FOXG1P55316 489 aaPredicted RBP18.1■□□□□ 0.49
VPS28-206ENST00000526734 PRPS1P60891 318 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 ENTPD8Q5MY95 495 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 DEPDC4Q8N2C3 294 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 KBTBD8Q8NFY9 601 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 SLC19A3Q9BZV2 496 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 GRIP2Q9C0E4 1043 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 POLR2J2Q9GZM3 115 aaKnown RBP18.1■□□□□ 0.49
VPS28-206ENST00000526734 POLR2J3Q9H1A7 115 aaKnown RBP18.1■□□□□ 0.49
VPS28-206ENST00000526734 B3GAT1Q9P2W7 334 aa18.1■□□□□ 0.49
VPS28-206ENST00000526734 FAM220BPB1ANY3 271 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 BGLAPP02818 100 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 HOXB1P14653 301 aaPredicted RBP18.09■□□□□ 0.49
VPS28-206ENST00000526734 NQO1P15559 274 aaKnown RBP18.09■□□□□ 0.49
VPS28-206ENST00000526734 CDH11P55287 796 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 CLDN17P56750 224 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 SF3A3Q12874 501 aaKnown RBP eCLIP18.09■□□□□ 0.491e-7■■■■■ 32.2
VPS28-206ENST00000526734 NPTX1Q15818 432 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 C9orf135Q5VTT2 229 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 LINC00114Q6XXX2 140 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 UEVLDQ8IX04 471 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 WDR31Q8NA23 367 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 PIK3C3Q8NEB9 887 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 MAGEE2Q8TD90 523 aaPredicted RBP18.09■□□□□ 0.49
VPS28-206ENST00000526734 ADAMTS16Q8TE57 1224 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 SMAP2Q8WU79 429 aaPredicted RBP18.09■□□□□ 0.49
VPS28-206ENST00000526734 PERPQ96FX8 193 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 ZNF583Q96ND8 569 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 WFDC6Q9BQY6 131 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 MRPL39Q9NYK5 338 aaKnown RBP18.09■□□□□ 0.49
VPS28-206ENST00000526734 NOX1Q9Y5S8 564 aa18.09■□□□□ 0.49
VPS28-206ENST00000526734 CPSF4LA6NMK7 179 aaKnown RBP18.08■□□□□ 0.48
VPS28-206ENST00000526734 SHISA9B4DS77 424 aa18.08■□□□□ 0.48
VPS28-206ENST00000526734 RPL36A-HNRNPH2H7BZ11 118 aa18.08■□□□□ 0.48
VPS28-206ENST00000526734 ZNF432O94892 652 aa18.08■□□□□ 0.48
VPS28-206ENST00000526734 DANCRP0C864 163 aa18.08■□□□□ 0.48
VPS28-206ENST00000526734 CD40P25942 277 aa18.08■□□□□ 0.48
VPS28-206ENST00000526734 ZNF83P51522 516 aa18.08■□□□□ 0.48
VPS28-206ENST00000526734 IL1RL1Q01638 556 aa18.08■□□□□ 0.48
VPS28-206ENST00000526734 HMBOX1Q6NT76 420 aa18.08■□□□□ 0.48
VPS28-206ENST00000526734 TTC33Q6PID6 262 aaPredicted RBP18.08■□□□□ 0.48
VPS28-206ENST00000526734 YTHDF3Q7Z739 585 aaKnown RBP18.08■□□□□ 0.48
VPS28-206ENST00000526734 VANGL1Q8TAA9 524 aaPredicted RBP18.08■□□□□ 0.48
VPS28-206ENST00000526734 TRMT61AQ96FX7 289 aaKnown RBP18.08■□□□□ 0.48
VPS28-206ENST00000526734 C18orf12Q96KH6 178 aa18.08■□□□□ 0.48
VPS28-206ENST00000526734 ALKBH3Q96Q83 286 aaPredicted RBP18.08■□□□□ 0.48
VPS28-206ENST00000526734 CISD1Q9NZ45 108 aaKnown RBP18.08■□□□□ 0.48
VPS28-206ENST00000526734 LAMP3Q9UQV4 416 aa18.08■□□□□ 0.48
VPS28-206ENST00000526734 ROS1P08922 2347 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 DSCAMO60469 2012 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 TRAF3IP2O43734 574 aaPredicted RBP18.07■□□□□ 0.48
VPS28-206ENST00000526734 CRYBA2P53672 197 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 PUDPQ08623 228 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 PMS2P3Q13401 168 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 ETFDHQ16134 617 aa18.07■□□□□ 0.48
VPS28-206ENST00000526734 LSRQ86X29 649 aaPredicted RBP18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms