RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SMAD9O15198 467 aaKnown RBP9□□□□□ -0.97
VPS28-204ENST00000526054 CYTIPO60759 359 aa9□□□□□ -0.97
VPS28-204ENST00000526054 SS18L1O75177 396 aaPredicted RBP9□□□□□ -0.97
VPS28-204ENST00000526054 NPIPB7O75200 414 aa9□□□□□ -0.97
VPS28-204ENST00000526054 PRKD3O94806 890 aa9□□□□□ -0.97
VPS28-204ENST00000526054 THRBP10828 461 aa9□□□□□ -0.97
VPS28-204ENST00000526054 IMPDH2P12268 514 aa9□□□□□ -0.97
VPS28-204ENST00000526054 MSX2P35548 267 aaPredicted RBP9□□□□□ -0.97
VPS28-204ENST00000526054 ST3GAL3Q11203 375 aa9□□□□□ -0.97
VPS28-204ENST00000526054 TRIM25Q14258 630 aaKnown RBP9□□□□□ -0.97
VPS28-204ENST00000526054 MFSD13AQ14CX5 517 aa9□□□□□ -0.97
VPS28-204ENST00000526054 OR7A5Q15622 319 aa9□□□□□ -0.97
VPS28-204ENST00000526054 ACKR1Q16570 336 aa9□□□□□ -0.97
VPS28-204ENST00000526054 TMEM201Q5SNT2 666 aa9□□□□□ -0.97
VPS28-204ENST00000526054 ABLIM2Q6H8Q1 611 aa9□□□□□ -0.97
VPS28-204ENST00000526054 TTC33Q6PID6 262 aaPredicted RBP9□□□□□ -0.97
VPS28-204ENST00000526054 PAQR6Q6TCH4 344 aa9□□□□□ -0.97
VPS28-204ENST00000526054 C20orf204Q6ZNR8 217 aa9□□□□□ -0.97
VPS28-204ENST00000526054 FAM214BQ7L5A3 538 aa9□□□□□ -0.97
VPS28-204ENST00000526054 DHFR2Q86XF0 187 aa9□□□□□ -0.97
VPS28-204ENST00000526054 MFSD8Q8NHS3 518 aa9□□□□□ -0.97
VPS28-204ENST00000526054 ABHD3Q8WU67 409 aa9□□□□□ -0.97
VPS28-204ENST00000526054 POP5Q969H6 163 aaKnown RBP9□□□□□ -0.97
VPS28-204ENST00000526054 MCUR1Q96AQ8 359 aa9□□□□□ -0.97
VPS28-204ENST00000526054 CCDC124Q96CT7 223 aaKnown RBP9□□□□□ -0.97
VPS28-204ENST00000526054 PERPQ96FX8 193 aa9□□□□□ -0.97
VPS28-204ENST00000526054 SLC41A3Q96GZ6 507 aa9□□□□□ -0.97
VPS28-204ENST00000526054 Q96MF0 132 aa9□□□□□ -0.97
VPS28-204ENST00000526054 RAB3IPQ96QF0 476 aaPredicted RBP9□□□□□ -0.97
VPS28-204ENST00000526054 HS3ST6Q96QI5 342 aa9□□□□□ -0.97
VPS28-204ENST00000526054 TRIM15Q9C019 465 aa9□□□□□ -0.97
VPS28-204ENST00000526054 EMC3Q9P0I2 261 aa9□□□□□ -0.97
VPS28-204ENST00000526054 KLHL13Q9P2N7 655 aa9□□□□□ -0.97
VPS28-204ENST00000526054 SLC7A7Q9UM01 511 aa9□□□□□ -0.97
VPS28-204ENST00000526054 V9GYQ6 96 aa9□□□□□ -0.97
VPS28-204ENST00000526054 DSCAMO60469 2012 aa9□□□□□ -0.97
VPS28-204ENST00000526054 ARID1AO14497 2285 aa9□□□□□ -0.97
VPS28-204ENST00000526054 TLN2Q9Y4G6 2542 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 IGKV1D-42A0A075B6H8 117 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 H7C1Q1 480 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 CGAP01215 116 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 ITGA2P17301 1181 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 ATP6V1B2P21281 511 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 AGTR1P30556 359 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 RBM34P42696 430 aaKnown RBP8.99□□□□□ -0.97
VPS28-204ENST00000526054 RPS5P46782 204 aaKnown RBP8.99□□□□□ -0.97
VPS28-204ENST00000526054 EGR4Q05215 589 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 RASGEF1BQ0VAM2 473 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 PIN1Q13526 163 aaPredicted RBP8.99□□□□□ -0.97
VPS28-204ENST00000526054 PDK3Q15120 406 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 GUSBP1Q15486 140 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 EXOC3L2Q2M3D2 409 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 OTUD3Q5T2D3 398 aaPredicted RBP8.99□□□□□ -0.97
VPS28-204ENST00000526054 FAM69AQ5T7M9 428 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 LCN8Q6JVE9 175 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 OFCC1Q8IZS5 231 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 ZNF610Q8N9Z0 462 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 OR6K3Q8NGY3 331 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 OR6S1Q8NH40 331 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 SLC25A36Q96CQ1 311 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 ASB9Q96DX5 294 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 KTI12Q96EK9 354 aaPredicted RBP8.99□□□□□ -0.97
VPS28-204ENST00000526054 PYURFQ96I23 114 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 LRGUKQ96M69 825 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 FNDC11Q9BVV2 318 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 SLC19A3Q9BZV2 496 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 AMBRA1Q9C0C7 1298 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 KLHL4Q9C0H6 718 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 MMADHCQ9H3L0 296 aaPredicted RBP8.99□□□□□ -0.97
VPS28-204ENST00000526054 RIMS3Q9UJD0 308 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 CLEC4AQ9UMR7 237 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 FAM32AQ9Y421 112 aaKnown RBP8.99□□□□□ -0.97
VPS28-204ENST00000526054 ENPP4Q9Y6X5 453 aa8.99□□□□□ -0.97
VPS28-204ENST00000526054 FN1P02751 2386 aaKnown RBP8.98□□□□□ -0.97
VPS28-204ENST00000526054 AQP7P3A6NL99 342 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 ZNF724A8MTY0 619 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 ANKRD65E5RJM6 399 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 FTCDNL1E5RQL4 147 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 GPR171O14626 319 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 SMAD7O15105 426 aaKnown RBP8.98□□□□□ -0.97
VPS28-204ENST00000526054 GSC2O15499 205 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 AKR7A3O95154 331 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 LYPD3O95274 346 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 LY6G6DO95868 133 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 THY1P04216 161 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 YES1P07947 543 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 YAP1P46937 504 aaKnown RBP8.98□□□□□ -0.97
VPS28-204ENST00000526054 SLC16A1P53985 500 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 H3F3AP84243 136 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 TRAP1Q12931 704 aaKnown RBP8.98□□□□□ -0.97
VPS28-204ENST00000526054 TRAM2Q15035 370 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 ANKRD34AQ69YU3 496 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 PRSS57Q6UWY2 283 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 CYP2R1Q6VVX0 501 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 LINC00114Q6XXX2 140 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 WDR88Q6ZMY6 472 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 STK32CQ86UX6 486 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 TSPYL5Q86VY4 417 aaPredicted RBP8.98□□□□□ -0.97
VPS28-204ENST00000526054 CIARTQ8N365 385 aaPredicted RBP8.98□□□□□ -0.97
VPS28-204ENST00000526054 C10orf53Q8N6V4 93 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms