RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 IMP3Q9NV31 184 aaKnown RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 PLEK2Q9NYT0 353 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 C19orf25Q9UFG5 118 aaPredicted RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 IL36AQ9UHA7 158 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 CLEC2DQ9UHP7 191 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 RNF6Q9Y252 685 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 PLLPQ9Y342 182 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 STARD10Q9Y365 291 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 SAMHD1Q9Y3Z3 626 aaKnown RBP4.09□□□□□ -1.75
CD44-220ENST00000525688 R4GN57 208 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 CCDC171Q6TFL3 1326 aa4.09□□□□□ -1.75
CD44-220ENST00000525688 LOC285556D6RIA3 1793 aa4.09□□□□□ -1.76
CD44-220ENST00000525688 IGKV6D-41A0A0C4DH26 115 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 ATP6AP2A0A1C7CYW4 349 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 LRRC30A6NM36 301 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 ARHGEF33A8MVX0 844 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 SMIM1B2RUZ4 78 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 PRAMEF26H0Y7S4 382 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 CYB561D2O14569 222 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 CLOCKO15516 846 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 OR10H3O60404 316 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 OR2J3O76001 311 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 VTNP04004 478 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 DCNP07585 359 aaKnown RBP4.08□□□□□ -1.76
CD44-220ENST00000525688 UBCP0CG48 685 aaKnown RBP4.08□□□□□ -1.76
CD44-220ENST00000525688 HSPD1P10809 573 aaKnown RBP4.08□□□□□ -1.76
CD44-220ENST00000525688 UQCRBP14927 111 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 GJB2P29033 226 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 OR3A3P47888 321 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 TUFMP49411 452 aaKnown RBP4.08□□□□□ -1.76
CD44-220ENST00000525688 STK19P49842 368 aaPredicted RBP4.08□□□□□ -1.76
CD44-220ENST00000525688 ATP1B3P54709 279 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 PSMD4P55036 377 aaKnown RBP4.08□□□□□ -1.76
CD44-220ENST00000525688 CLDN17P56750 224 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 HERVK_113P63132 956 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 ERVK-8P63133 956 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 ADARB1P78563 741 aaKnown RBP4.08□□□□□ -1.76
CD44-220ENST00000525688 MYL7Q01449 175 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 OGDHQ02218 1023 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 IFFO1Q0D2I5 559 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 GRB14Q14449 540 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 GOLGA7BQ2TAP0 167 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 ACSF3Q4G176 576 aaPredicted RBP4.08□□□□□ -1.76
CD44-220ENST00000525688 KLHL22Q53GT1 634 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 UMODL1Q5DID0 1318 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 ZNF691Q5VV52 312 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 SLX4IPQ5VYV7 408 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 SLC22A10Q63ZE4 541 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 UQCC3Q6UW78 93 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 CWC27Q6UX04 472 aaKnown RBP4.08□□□□□ -1.76
CD44-220ENST00000525688 CATSPERDQ86XM0 798 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 TMEM99Q8N816 258 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 C8orf31Q8N9H6 132 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 ZNF680Q8NEM1 530 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 SDR9C7Q8NEX9 313 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 OR7A2PQ8NGA2 310 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 OR1F12Q8NHA8 337 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 NANPQ8TBE9 248 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 DYRK2Q92630 601 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 ESR2Q92731 530 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 NAT6Q93015 286 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 C8orf44Q96CB5 159 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 TMA16Q96EY4 203 aaKnown RBP4.08□□□□□ -1.76
CD44-220ENST00000525688 PLIN4Q96Q06 1357 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 IL4I1Q96RQ9 567 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 S1PR3Q99500 378 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 NAPGQ99747 312 aaPredicted RBP4.08□□□□□ -1.76
CD44-220ENST00000525688 SYT11Q9BT88 431 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 ERVK-6Q9BXR3 956 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 RNF121Q9H920 327 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 SLC40A1Q9NP59 571 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 SLC52A3Q9NQ40 469 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 MRPL40Q9NQ50 206 aaKnown RBP4.08□□□□□ -1.76
CD44-220ENST00000525688 OR2S2Q9NQN1 319 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 C8orf4Q9NR00 106 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 GNG12Q9UBI6 72 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 POLDIP2Q9Y2S7 368 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 MEMO1Q9Y316 297 aa4.08□□□□□ -1.76
CD44-220ENST00000525688 GREB1LQ9C091 1923 aaPredicted RBP4.07□□□□□ -1.76
CD44-220ENST00000525688 RAD50Q92878 1312 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 KCNE1BA0A087WTH5 132 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 KBTBD11-OT1A0A1B0GTJ5 212 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 BCLAF3A2AJT9 711 aaKnown RBP4.07□□□□□ -1.76
CD44-220ENST00000525688 SMCO2A6NFE2 343 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 FABP12A6NFH5 140 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 MSGN1A6NI15 193 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 CCT8L1PA6NM43 557 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 MKRN2OSH3BPM6 223 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 KLRC4-KLRK1H3BQV0 150 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 LIN7AO14910 233 aaPredicted RBP4.07□□□□□ -1.76
CD44-220ENST00000525688 EPHB6O15197 1021 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 TOX3O15405 576 aaPredicted RBP4.07□□□□□ -1.76
CD44-220ENST00000525688 GMDSO60547 372 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 TSPAN2O60636 221 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 GPX5O75715 221 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 SCELO95171 688 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 VAPBO95292 243 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 NGFP01138 241 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 RPN2P04844 631 aa4.07□□□□□ -1.76
CD44-220ENST00000525688 ATP1B1P05026 303 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms