RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 OR52A5Q9H2C5 316 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 ADAM18Q9Y3Q7 739 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 NHSQ6T4R5 1651 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 FAM230AA0A1W2PPH8 454 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 SELENOFO60613 162 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 CD6P30203 668 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 BSGP35613 385 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 GK2Q14410 553 aaPredicted RBP11.71□□□□□ -0.53
USP53-209ENST00000514665 MEP1BQ16820 701 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 ZNF585AQ6P3V2 769 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 BBS1Q8NFJ9 593 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 SCGB1C1Q8TD33 95 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 NINJ1Q92982 152 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 MED16Q9Y2X0 877 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 FER1L6Q2WGJ9 1857 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 TRABD2BA6NFA1 517 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 GGT3PA6NGU5 568 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 FGF17O60258 216 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 CNOT4O95628 575 aaKnown RBP11.71□□□□□ -0.53
USP53-209ENST00000514665 HOXB5P09067 269 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 CTHP32929 405 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 RAP2BP61225 183 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 MELKQ14680 651 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 KIAA0040Q15053 153 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 PPA1Q15181 289 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 Q499Y3 187 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 LINC00346Q8IVM7 164 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 OR5D18Q8NGL1 313 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 RSC1A1Q92681 617 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 OPALINQ96PE5 141 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 CHST2Q9Y4C5 530 aa11.71□□□□□ -0.53
USP53-209ENST00000514665 C2orf72A6NCS6 295 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 HCRTR1O43613 425 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 SLC43A1O75387 559 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 SOX18P35713 384 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 AKR1C2P52895 323 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 MRPS21P82921 87 aaKnown RBP11.71□□□□□ -0.54
USP53-209ENST00000514665 CYCSP99999 105 aaKnown RBP11.71□□□□□ -0.54
USP53-209ENST00000514665 ZNF620Q6ZNG0 422 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 ESPNLQ6ZVH7 1005 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 USP51Q70EK9 711 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 ZNF683Q8IZ20 524 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 FBXL6Q8N531 539 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 FRMD1Q8N878 549 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 CNRIP1Q96F85 164 aaPredicted RBP11.71□□□□□ -0.54
USP53-209ENST00000514665 TCTN2Q96GX1 697 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 STRCP1A6NGW2 1772 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 TRBV11-1A0A0K0K1C0 115 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 GABRR1P24046 479 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 RPS27P42677 84 aaKnown RBP11.71□□□□□ -0.54
USP53-209ENST00000514665 CAMLGP49069 296 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 TAS2R19P59542 299 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 RACK1P63244 317 aaKnown RBP11.71□□□□□ -0.54
USP53-209ENST00000514665 DPTQ07507 201 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 IDO2Q6ZQW0 420 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 CALHM3Q86XJ0 350 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 ZSCAN4Q8NAM6 433 aaPredicted RBP11.71□□□□□ -0.54
USP53-209ENST00000514665 ZNF566Q969W8 418 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 YIPF6Q96EC8 236 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 SLC6A14Q9UN76 642 aa11.71□□□□□ -0.54
USP53-209ENST00000514665 PTRH2Q9Y3E5 179 aaKnown RBP11.71□□□□□ -0.54
USP53-209ENST00000514665 LAMTOR5O43504 91 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 ELK1P19419 428 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 THBS2P35442 1172 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 RPS15P62841 145 aaKnown RBP11.7□□□□□ -0.54
USP53-209ENST00000514665 TMEM176BQ3YBM2 270 aaPredicted RBP11.7□□□□□ -0.54
USP53-209ENST00000514665 PRAMEF20Q5VT98 475 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 DVL3Q92997 716 aaPredicted RBP11.7□□□□□ -0.54
USP53-209ENST00000514665 PRRT1Q99946 306 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 PSD2Q9BQI7 771 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 SMIM3Q9BZL3 60 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 ANKRD19PQ9H560 264 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 SRPK3Q9UPE1 567 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 ZNF35P13682 527 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 TNFRSF4P43489 277 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 CSNK1A1P48729 337 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 ADPRHP54922 357 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 ANKRD33Q7Z3H0 272 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 OR2A1Q8NGT9 310 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 SEC22CQ9BRL7 303 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 LIN7BQ9HAP6 207 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 DUSP22Q9NRW4 184 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 FGF21Q9NSA1 209 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 B4GALT7Q9UBV7 327 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 hCG_1807616A0A1W2PRN6 198 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 SUSD5O60279 629 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 CTNSO60931 367 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 UTS2O95399 124 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 SIX6O95475 246 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 HRGP04196 525 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 SPTBP11277 2137 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 PIPP12273 146 aaPredicted RBP11.7□□□□□ -0.54
USP53-209ENST00000514665 CTGFP29279 349 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 HOXA9P31269 272 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 FASLGP48023 281 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 EEF1A1P68104 462 aaKnown RBP11.7□□□□□ -0.54
USP53-209ENST00000514665 FABP5Q01469 135 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 CAMK2DQ13557 499 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 SLC9A3R2Q15599 337 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 UBE2NLQ5JXB2 153 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms