RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 TBC1D3EA0A087X179 549 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 TBC1D3KA0A087X1G2 549 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 TBC1D3FA6NER0 549 aaPredicted RBP8.87□□□□□ -0.99
VCAN-210ENST00000513960 TBC1D3LB9A6J9 549 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 SLC31A1O15431 190 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 EPPINO95925 133 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 TGM6O95932 706 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 IGHA1P01876 353 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 TBC1D3HP0C7X1 549 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 MNDAP41218 407 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 SEC13P55735 322 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 B2MP61769 119 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 PUS10Q3MIT2 529 aaKnown RBP8.87□□□□□ -0.99
VCAN-210ENST00000513960 SLC25A30Q5SVS4 291 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 TBC1D3GQ6DHY5 549 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 TBC1D3CQ6IPX1 549 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 CD300LDQ6UXZ3 194 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 KCTD9Q7L273 389 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 TBC1D3Q8IZP1 549 aaPredicted RBP8.87□□□□□ -0.99
VCAN-210ENST00000513960 KCT2Q8NC54 265 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 SLC16A11Q8NCK7 471 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 SFXN5Q8TD22 340 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 TMEM239Q8WW34 195 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 C3orf49Q96BT1 292 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 MRPS24Q96EL2 167 aaKnown RBP8.87□□□□□ -0.99
VCAN-210ENST00000513960 ZNF75AQ96N20 296 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 SLC17A9Q9BYT1 436 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 SYNDIG1Q9H7V2 258 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 BIN3Q9NQY0 253 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 MRPS18AQ9NVS2 196 aaKnown RBP8.87□□□□□ -0.99
VCAN-210ENST00000513960 EXOGQ9Y2C4 368 aaKnown RBP8.87□□□□□ -0.99
VCAN-210ENST00000513960 CNTRLQ7Z7A1 2325 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 C13orf42A0A1B0GVH6 325 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 TUBAL3A6NHL2 446 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 AGPAT2O15120 278 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 EMC8O43402 210 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 FADS1O60427 444 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 ITGA10O75578 1167 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 AIFM1O95831 613 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 CBFBQ13951 182 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 BAIAP2L2Q6UXY1 529 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 THSD4Q6ZMP0 1018 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 OR2L3Q8NG85 312 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 OR51S1Q8NGJ8 323 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 OR1S1Q8NH92 325 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 TSPAN10Q9H1Z9 355 aaPredicted RBP8.87□□□□□ -0.99
VCAN-210ENST00000513960 IL20Q9NYY1 176 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 SLC6A5Q9Y345 797 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 COLEC10Q9Y6Z7 277 aa8.87□□□□□ -0.99
VCAN-210ENST00000513960 KIAA1549LQ6ZVL6 1849 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 NAP1L6A6NFF2 107 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 GRXCR1A8MXD5 290 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 ASGR2P07307 311 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 MAKP20794 623 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 VAMP1P23763 118 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 GDI1P31150 447 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 KCNJ3P48549 501 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 ARFIP1P53367 373 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 GUCA2AQ02747 115 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 KCNAB1Q14722 419 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 SMCO1Q147U7 214 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 C2orf68Q2NKX9 166 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 ZC3H14Q6PJT7 736 aaKnown RBP8.86□□□□□ -0.99
VCAN-210ENST00000513960 SEZ6L2Q6UXD5 910 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 RAB11FIP2Q7L804 512 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 FAM220AQ7Z4H9 259 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 C12orf45Q8N5I9 185 aaPredicted RBP8.86□□□□□ -0.99
VCAN-210ENST00000513960 ZSCAN1Q8NBB4 408 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 LCN9Q8WX39 176 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 DIO2Q92813 273 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 BPIFA2Q96DR5 249 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 CNRIP1Q96F85 164 aaPredicted RBP8.86□□□□□ -0.99
VCAN-210ENST00000513960 OR2S2Q9NQN1 319 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 PRDM7Q9NQW5 492 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 CALML5Q9NZT1 146 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 ZNF860A6NHJ4 632 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 EEF1E1-BLOC1S5C9J1V9 151 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 GABARAPH6UMI1 98 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 DNASE2O00115 360 aaPredicted RBP8.86□□□□□ -0.99
VCAN-210ENST00000513960 ACOT7O00154 380 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 TXNL1O43396 289 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 GMFGO60234 142 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 PTP4A3O75365 173 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 CEACAM5P06731 702 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 HOXB3P14651 431 aaPredicted RBP8.86□□□□□ -0.99
VCAN-210ENST00000513960 AQP2P41181 271 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 SKP1P63208 163 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 BTN3A2P78410 334 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 NKPD1Q17RQ9 610 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 TSEN15Q8WW01 171 aaKnown RBP8.86□□□□□ -0.99
VCAN-210ENST00000513960 TNFRSF13CQ96RJ3 184 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 LMF1Q96S06 567 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 PTDSS2Q9BVG9 487 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 NRIP3Q9NQ35 241 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 MED17Q9NVC6 651 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 PIPOXQ9P0Z9 390 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 CA5BQ9Y2D0 317 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 V9GY05 133 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 TRBV23OR9-2A0A075B6M9 112 aa8.86□□□□□ -0.99
VCAN-210ENST00000513960 LRRC72A6NJI9 287 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms