RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 OR51V1Q9H2C8 321 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ZFYVE1Q9HBF4 777 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 APMAPQ9HDC9 416 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 KRCC1Q9NPI7 259 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 HINT3Q9NQE9 182 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 OR14J1Q9UGF5 321 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 CCNL1Q9UK58 526 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ADAMTS5Q9UNA0 930 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 A4GNTQ9UNA3 340 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 KCNE1BA0A087WTH5 132 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 TMEM235A6NFC5 223 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 RRP8O43159 456 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ARIH2O95376 493 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 SLC2A1P11166 492 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 RGRP47804 291 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ZNHIT3Q15649 155 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 LPCAT3Q6P1A2 487 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 FAM199XQ6PEV8 388 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 UMODL1-AS1Q8N2C9 162 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ZBTB2Q8N680 514 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 CCDC107Q8WV48 283 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ROBO4Q8WZ75 1007 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 PIK3IP1Q96FE7 263 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 OR14A2Q96R54 314 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 FKRPQ9H9S5 495 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 SPACA1Q9HBV2 294 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 MIEF1Q9NQG6 463 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 ZMIZ1Q9ULJ6 1067 aa11.09□□□□□ -0.63
LIMCH1-213ENST00000511496 NUDT19A8MXV4 375 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 RNASET2O00584 256 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 BCAT2O15382 392 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF208O43345 1280 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 UGDHO60701 494 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 OR4E1P0C645 316 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 APLNRP35414 380 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 SLC26A5P58743 744 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF280BQ86YH2 543 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 CPEB3Q8NE35 698 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 S100A13Q99584 98 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 UTP23Q9BRU9 249 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 SNHG12Q9BXW3 62 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 ATG5Q9H1Y0 275 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 SCML2Q9UQR0 700 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 PLXNA1Q9UIW2 1896 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 GOLGA4Q13439 2230 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 OR5H15A6NDH6 313 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 OR5H1A6NKK0 313 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 RDH16O75452 317 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 TMIGD3P0DMS9 266 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 BMP7P18075 431 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 HTR1FP30939 366 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 OR1E1P30953 314 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 PMELP40967 661 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 GABREP78334 506 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 FAM83HQ6ZRV2 1179 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 UBE2R2Q712K3 238 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 TMEM169Q96HH4 297 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 ZPBPQ9BS86 351 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 RNF39Q9H2S5 420 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 CD84Q9UIB8 345 aa11.08□□□□□ -0.64
LIMCH1-213ENST00000511496 SYNDIG1LA6NDD5 238 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF587BE7ETH6 402 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 ADAM10O14672 748 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 SFTPBP07988 381 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 MYOGP15173 224 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 TYRP1P17643 537 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 IL2RGP31785 369 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 CNTN1Q12860 1018 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 TMEM35AQ53FP2 167 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 CLEC2AQ6UVW9 174 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF574Q6ZN55 896 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF664Q8N3J9 261 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 TEX26Q8N6G2 289 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 REPS2Q8NFH8 660 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 NEIL2Q969S2 332 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 MVB12AQ96EY5 273 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 OR51B6Q9H340 312 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 EPHX3Q9H6B9 360 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 ZNF214Q9UL59 606 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 EXOGQ9Y2C4 368 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 TIMM10BQ9Y5J6 103 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 URGCP-MRPS24S4R325 110 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 ANKRD36A6QL64 1941 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 TSC2P49815 1807 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 GON4LQ3T8J9 2241 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 HBP1O60381 514 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 AK1P00568 194 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 CD34P28906 385 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 PPM1AP35813 382 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 DHPSP49366 369 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 RAC1P63000 192 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 GUCA2AQ02747 115 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 MESTQ5EB52 335 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 STPG1Q5TH74 334 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 C1orf94Q6P1W5 598 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 AUTS2Q8WXX7 1259 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 TXNRD2Q9NNW7 524 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 LPAR3Q9UBY5 353 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 KPTNQ9Y664 436 aa11.07□□□□□ -0.64
LIMCH1-213ENST00000511496 A0A087WUU8 490 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms