RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 NFKBIDQ8NI38 313 aa11.34□□□□□ -0.59
HMGCS1-205ENST00000508319 SLC25A36Q96CQ1 311 aa11.34□□□□□ -0.59
HMGCS1-205ENST00000508319 SPDL1Q96EA4 605 aa11.34□□□□□ -0.59
HMGCS1-205ENST00000508319 ZNF317Q96PQ6 595 aaPredicted RBP11.34□□□□□ -0.59
HMGCS1-205ENST00000508319 SLC38A2Q96QD8 506 aa11.34□□□□□ -0.59
HMGCS1-205ENST00000508319 KRTAP3-3Q9BYR6 98 aa11.34□□□□□ -0.59
HMGCS1-205ENST00000508319 KRTAP3-2Q9BYR7 98 aa11.34□□□□□ -0.59
HMGCS1-205ENST00000508319 C12orf10Q9HB07 376 aa11.34□□□□□ -0.59
HMGCS1-205ENST00000508319 TMEM45AQ9NWC5 275 aa11.34□□□□□ -0.59
HMGCS1-205ENST00000508319 VAPAQ9P0L0 249 aa11.34□□□□□ -0.59
HMGCS1-205ENST00000508319 GMEB1Q9Y692 573 aa11.34□□□□□ -0.59
HMGCS1-205ENST00000508319 MALRD1Q5VYJ5 2156 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 ARPC4-TTLL3A0A0A6YYG9 625 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 A0A1B0GWA3 101 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 M0R082 166 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 LY6HO94772 140 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 SLC25A16P16260 332 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 APOBEC3AP31941 199 aaPredicted RBP11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 TUBA1BP68363 451 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 TUBA4AP68366 448 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 CDK6Q00534 326 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 LOXL1Q08397 574 aaPredicted RBP11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 SWI5Q1ZZU3 235 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 MST1LQ2TV78 715 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 TMEM249Q2WGJ8 235 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 GLIPR1L2Q4G1C9 344 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 PAGE3Q5JUK9 113 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 C6orf52Q5T4I8 152 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 FAM69AQ5T7M9 428 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 REEP3Q6NUK4 255 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 DHRS4L2Q6PKH6 230 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 TUBA1AQ71U36 451 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 CXXC5Q7LFL8 322 aaKnown RBP11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 LSMEM1Q8N8F7 131 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 ZNF417Q8TAU3 575 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 C10orf105Q8TEF2 133 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 NANOS1Q8WY41 292 aaKnown RBP11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 BCL2L2Q92843 193 aaPredicted RBP11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 ZNF587Q96SQ5 575 aaPredicted RBP11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 CCDC28BQ9BUN5 200 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 KATNB1Q9BVA0 655 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 LINC00470Q9BZP3 86 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 IKZF5Q9H5V7 419 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 SEC61A2Q9H9S3 476 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 YAE1D1Q9NRH1 226 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 CCDC167Q9P0B6 97 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 CRNNQ9UBG3 495 aaPredicted RBP11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 RCE1Q9Y256 329 aa11.33□□□□□ -0.6
HMGCS1-205ENST00000508319 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.33□□□□□ -0.62e-9■■■□□ 16.8
HMGCS1-205ENST00000508319 A0A096LPE4 126 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 A0A1W2PPZ6 126 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 RPL36A-HNRNPH2H7BZ11 118 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 TRAF3IP2O43734 574 aaPredicted RBP11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 TPST1O60507 370 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 IGLV1-44P01699 117 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 CECR9P0C854 216 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 GTF2E2P29084 291 aaKnown RBP11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 EFNA4P52798 201 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 SH3BGRP55822 239 aaPredicted RBP11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 CLDN17P56750 224 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 UBE2NP61088 152 aaKnown RBP11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 VLDLRP98155 873 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 ROR2Q01974 943 aaKnown RBP11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 CHRNB3Q05901 458 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 ADRM1Q16186 407 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 ALG10BQ5I7T1 473 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 HMBOX1Q6NT76 420 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 C5orf46Q6UWT4 87 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 HIPK1Q86Z02 1210 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 MAGEE2Q8TD90 523 aaPredicted RBP11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 LRRC8CQ8TDW0 803 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 FAM168AQ92567 244 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 TAAR8Q969N4 342 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 FBXO17Q96EF6 278 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 OXGR1Q96P68 337 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 SORCS2Q96PQ0 1159 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 TNFRSF13CQ96RJ3 184 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 PRR14Q9BWN1 585 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 TMEM38AQ9H6F2 299 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 CA10Q9NS85 328 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 KLHL14Q9P2G3 628 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 RPS6KB2Q9UBS0 482 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 PMF1-BGLAPU3KQ54 211 aa11.32□□□□□ -0.6
HMGCS1-205ENST00000508319 TRAV36DV7A0A075B6V5 113 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 A8MV72 311 aaPredicted RBP11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 AIM2O14862 343 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 OR2T1O43869 369 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 SLC43A1O75387 559 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 IGKV3-15P01624 115 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 CSF3P09919 207 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 BMP4P12644 408 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 ZNF43P17038 809 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 PPIBP23284 216 aaKnown RBP11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 PAX7P23759 505 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 GRPRP30550 384 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 CALCRP30988 508 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 ATP4BP51164 291 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 AQP5P55064 265 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 NAAAQ02083 359 aa11.31□□□□□ -0.6
HMGCS1-205ENST00000508319 SCARB2Q14108 478 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms