RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 PRR32B1ATL7 298 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 IDSB3KWA1 339 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 MT-ND4P03905 459 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 YPEL5P62699 121 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 PON3Q15166 354 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNHIT3Q15649 155 aaPredicted RBP14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 DPY19L2P2Q6ZN68 376 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CMTM4Q8IZR5 234 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SLC22A18ASQ8N1D0 253 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 DEFB119Q8N690 84 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SLC37A2Q8TED4 501 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF431Q8TF32 576 aaPredicted RBP14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 DERL3Q96Q80 235 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CCDC3Q9BQI4 270 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 AUNIPQ9H7T9 357 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SCPEP1Q9HB40 452 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 LRIT1Q9P2V4 623 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 MGAT4AQ9UM21 535 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ING4Q9UNL4 249 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ANKRD61A6NGH8 418 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ST6GAL1P15907 406 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SPI1P17947 270 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TPMTP51580 245 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 GPR143P51810 404 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 STARD6P59095 220 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ST3GAL2Q16842 350 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 HSD17B12Q53GQ0 312 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF782Q6ZMW2 699 aaPredicted RBP14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 BTN2A1Q7KYR7 527 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TIGD4Q8IY51 512 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 C7orf57Q8NEG2 295 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 OR13H1Q8NG92 308 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SMIM4Q8WVI0 70 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 RIT1Q92963 219 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 C7orf50Q9BRJ6 194 aaKnown RBP14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 NOX4Q9NPH5 578 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 COPZ2Q9P299 210 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 RPS6KB2Q9UBS0 482 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SIT1Q9Y3P8 196 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CLDN16Q9Y5I7 305 aa14.7□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 NDUFA2O43678 99 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 H2AFB2P0C5Z0 115 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 RPL4P36578 427 aaKnown RBP14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 RAG2P55895 527 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 DYRK1AQ13627 763 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ANGPT1Q15389 498 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 UBE2NLQ5JXB2 153 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 FAM199XQ6PEV8 388 aaPredicted RBP14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 BAIAP2L2Q6UXY1 529 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 OR4C3Q8NH37 302 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 RASD2Q96D21 266 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 RANBP3Q9H6Z4 567 aaPredicted RBP14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 C4orf47A7E2U8 309 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF593O00488 134 aaPredicted RBP14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ARPC3O15145 178 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TNFP01375 233 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CT45A8P0DMV1 189 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CT45A9P0DMV2 189 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ANXA3P12429 323 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SRMP19623 302 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 MAGEB1P43366 347 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 NANOS3P60323 173 aaKnown RBP14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ERVK-25P63136 954 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 LGALS3BPQ08380 585 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 DMWDQ09019 674 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 NNATQ16517 81 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CT45A2Q5DJT8 189 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SLC35D3Q5M8T2 416 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 LINC01590Q5TEZ4 76 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SHEQ5VZ18 495 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 RGP1Q92546 391 aaPredicted RBP14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 HSPA12BQ96MM6 686 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CMTM3Q96MX0 182 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 WSB2Q9NYS7 404 aaPredicted RBP14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 HCN3Q9P1Z3 774 aa14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ELF5Q9UKW6 265 aaPredicted RBP14.69□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 IGKV1D-42A0A075B6H8 117 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 A0A087WV48 116 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 A0A0A6YYC8 382 aaPredicted RBP14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 OR2W5A6NFC9 320 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 EFCAB7A8K855 629 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ATP6V1G2-DDX39BF2Z307 99 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 I3L1I5 382 aaPredicted RBP14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 NOS1APO75052 506 aaPredicted RBP14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TSC22D2O75157 780 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 OR7A10O76100 309 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SULT1A3P0DMM9 295 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SULT1A4P0DMN0 295 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 GABRG2P18507 467 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 AKT2P31751 481 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 GDNFP39905 211 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 PER3P56645 1201 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 RPS4XP62701 263 aaKnown RBP14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SNTB2Q13425 540 aaKnown RBP14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF542PQ5EBM4 170 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF684Q5T5D7 378 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZBTB37Q5TC79 503 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 BEST4Q8NFU0 473 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 MOSPD2Q8NHP6 518 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF671Q8TAW3 534 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms