RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 MFSD8Q8NHS3 518 aa10.76□□□□□ -0.69
CPSF3-204ENST00000489403 SLC38A5Q8WUX1 472 aa10.76□□□□□ -0.69
CPSF3-204ENST00000489403 ZBTB9Q96C00 473 aa10.76□□□□□ -0.69
CPSF3-204ENST00000489403 ZNF317Q96PQ6 595 aaPredicted RBP10.76□□□□□ -0.69
CPSF3-204ENST00000489403 PAIP2Q9BPZ3 127 aaKnown RBP10.76□□□□□ -0.69
CPSF3-204ENST00000489403 SPATA9Q9BWV2 254 aa10.76□□□□□ -0.69
CPSF3-204ENST00000489403 TPT1P8Q9HAU6 139 aa10.76□□□□□ -0.69
CPSF3-204ENST00000489403 KCNK9Q9NPC2 374 aa10.76□□□□□ -0.69
CPSF3-204ENST00000489403 SEC14L4Q9UDX3 406 aa10.76□□□□□ -0.69
CPSF3-204ENST00000489403 RPL36A-HNRNPH2H7BZ11 118 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 HDAC3O15379 428 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 SLC22A3O75751 556 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 AHSA1O95433 338 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 ANP32DO95626 131 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 STAMBPO95630 424 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 TGFAP01135 160 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 ZCCHC18P0CG32 403 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 KITP10721 976 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 HNF1AP20823 631 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 RPS5P46782 204 aaKnown RBP10.75□□□□□ -0.69
CPSF3-204ENST00000489403 IDH3GP51553 393 aaPredicted RBP10.75□□□□□ -0.69
CPSF3-204ENST00000489403 SH3BGRP55822 239 aaPredicted RBP10.75□□□□□ -0.69
CPSF3-204ENST00000489403 CLDN17P56750 224 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 HOXC5Q00444 222 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 HGFACQ04756 655 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 EGR4Q05215 589 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 ZSWIM7Q19AV6 140 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 PDCD4Q53EL6 469 aaKnown RBP10.75□□□□□ -0.69
CPSF3-204ENST00000489403 FAM169BQ8N8A8 192 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 ANKRD42Q8N9B4 389 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 NUP37Q8NFH4 326 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 OR4F15Q8NGB8 312 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 VPS33AQ96AX1 596 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 SLC25A36Q96CQ1 311 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 KTI12Q96EK9 354 aaPredicted RBP10.75□□□□□ -0.69
CPSF3-204ENST00000489403 MAELQ96JY0 434 aaKnown RBP10.75□□□□□ -0.69
CPSF3-204ENST00000489403 CENPHQ9H3R5 247 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 ZNF442Q9H7R0 627 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 MOV10Q9HCE1 1003 aaKnown RBP10.75□□□□□ -0.69
CPSF3-204ENST00000489403 B3GAT1Q9P2W7 334 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.75□□□□□ -0.69
CPSF3-204ENST00000489403 RCE1Q9Y256 329 aa10.75□□□□□ -0.69
CPSF3-204ENST00000489403 V9GYY5 206 aaPredicted RBP10.75□□□□□ -0.69
CPSF3-204ENST00000489403 A0A0G2JPF8 293 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 LRP5LA4QPB2 252 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 ZNF503-AS2A6NEH8 195 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 TRPC5OSA6NMA1 111 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 HNRNPCL2B2RXH8 293 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 HNRNPCL3B7ZW38 293 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 hCG_2039718K7EN88 272 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 HNRNPCL1O60812 293 aaKnown RBP10.74□□□□□ -0.69
CPSF3-204ENST00000489403 FZD7O75084 574 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 SNNO75324 88 aaPredicted RBP10.74□□□□□ -0.69
CPSF3-204ENST00000489403 ZNF432O94892 652 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 HNRNPCL4P0DMR1 293 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 HOXB1P14653 301 aaPredicted RBP10.74□□□□□ -0.69
CPSF3-204ENST00000489403 IDO1P14902 403 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 CBR1P16152 277 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 ZNF43P17038 809 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 GTF2E2P29084 291 aaKnown RBP10.74□□□□□ -0.69
CPSF3-204ENST00000489403 THBS4P35443 961 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 ARF1P84077 181 aaKnown RBP10.74□□□□□ -0.69
CPSF3-204ENST00000489403 CR1LQ2VPA4 569 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 ZNF311Q5JNZ3 666 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 CEP85LQ5SZL2 805 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 NXNQ6DKJ4 435 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 ZNF540Q8NDQ6 660 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 ZNF837Q96EG3 531 aaPredicted RBP10.74□□□□□ -0.69
CPSF3-204ENST00000489403 RAB1BQ9H0U4 201 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 THAP1Q9NVV9 213 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 ZNF232Q9UNY5 417 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 IFT52Q9Y366 437 aa10.74□□□□□ -0.69
CPSF3-204ENST00000489403 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.73□□□□□ -0.69
CPSF3-204ENST00000489403 IGHV2OR16-5A0A0B4J2B6 119 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 TMEM129A0AVI4 362 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 SLC43A1O75387 559 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 IGFBP1P08833 259 aaPredicted RBP10.73□□□□□ -0.69
CPSF3-204ENST00000489403 TACSTD2P09758 323 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 NUDT7P0C024 238 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 DAOP14920 347 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 GIFP27352 417 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 IL2RGP31785 369 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 WDR4P57081 412 aaKnown RBP10.73□□□□□ -0.69
CPSF3-204ENST00000489403 NPRL3Q12980 569 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 CEACAM16Q2WEN9 425 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 SLC9B1Q4ZJI4 515 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 HHATQ5VTY9 493 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 C6orf89Q6UWU4 347 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 MSANTD1Q6ZTZ1 278 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 SPATA21Q7Z572 469 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 ZCCHC24Q8N2G6 241 aaKnown RBP10.73□□□□□ -0.69
CPSF3-204ENST00000489403 SVOPLQ8N434 492 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 ANKK1Q8NFD2 765 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 OR9I1Q8NGQ6 314 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 ITCHQ96J02 903 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 OXGR1Q96P68 337 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 DOK1Q99704 481 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 RSPO3Q9BXY4 272 aaPredicted RBP10.73□□□□□ -0.69
CPSF3-204ENST00000489403 ARMC7Q9H6L4 198 aa10.73□□□□□ -0.69
CPSF3-204ENST00000489403 RMND5AQ9H871 391 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms