RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 FAM69AQ5T7M9 428 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 MEPCEQ7L2J0 689 aaKnown RBP12.81□□□□□ -0.36
CUX1-209ENST00000487284 NANOGNBQ7Z5D8 188 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 FADS6Q8N9I5 356 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 SLC37A3Q8NCC5 494 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 OR2M3Q8NG83 312 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 OR6S1Q8NH40 331 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 PAQR8Q8TEZ7 354 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 PTP4A1Q93096 173 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 SGCZQ96LD1 299 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 SIGLEC12Q96PQ1 595 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 UTP23Q9BRU9 249 aaKnown RBP12.81□□□□□ -0.36
CUX1-209ENST00000487284 JAM3Q9BX67 310 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 RACGAP1Q9H0H5 632 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 MED20Q9H944 212 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 LRFN1Q9P244 771 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 CLEC2DQ9UHP7 191 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 ERGIC3Q9Y282 383 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 EXOSC1Q9Y3B2 195 aaKnown RBP12.81□□□□□ -0.36
CUX1-209ENST00000487284 ADAM18Q9Y3Q7 739 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 IER3IP1Q9Y5U9 82 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 NCKAP5O14513 1909 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 TNRC6AQ8NDV7 1962 aaKnown RBP12.81□□□□□ -0.36
CUX1-209ENST00000487284 FREM3P0C091 2139 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 ACACBO00763 2458 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 CCDC182A6NF36 153 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 IGHA1P01876 353 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 CD14P08571 375 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 HIST1H1CP16403 213 aaKnown RBP12.81□□□□□ -0.36
CUX1-209ENST00000487284 CD36P16671 472 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 MYL12AP19105 171 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 PAICSP22234 425 aaKnown RBP12.81□□□□□ -0.36
CUX1-209ENST00000487284 CASRP41180 1078 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 AQP2P41181 271 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 ETV1P50549 477 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 ZNF41P51814 821 aaPredicted RBP12.81□□□□□ -0.36
CUX1-209ENST00000487284 FOXF1Q12946 379 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 LSAMPQ13449 338 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 DOC2BQ14184 412 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 PLPPR5Q32ZL2 321 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 ALG10Q5BKT4 473 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 C1orf140Q5VVS0 124 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 C1QL3Q5VWW1 255 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 SLC22A10Q63ZE4 541 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 SPINK14Q6IE38 97 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 ARSKQ6UWY0 536 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 MAMDC2Q7Z304 686 aaPredicted RBP12.81□□□□□ -0.36
CUX1-209ENST00000487284 FAM122BQ7Z309 247 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 GPALPP1Q8IXQ4 340 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 KISS1RQ969F8 398 aaPredicted RBP12.81□□□□□ -0.36
CUX1-209ENST00000487284 MRGPRX4Q96LA9 322 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 MGLLQ99685 303 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 NPAS1Q99742 590 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 KATNB1Q9BVA0 655 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 ANGPTL4Q9BY76 406 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 NDEL1Q9GZM8 345 aa12.81□□□□□ -0.36
CUX1-209ENST00000487284 TMEM129A0AVI4 362 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 SLC22A31A6NKX4 558 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 G3V3Y1 287 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 BLOC1S5-TXNDC5H3BN57 136 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 J3QRE1 110 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 IMPA2O14732 288 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 MYL12BO14950 172 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 ZNF208O43345 1280 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 NEURL1O76050 574 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 APOL3O95236 402 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 AHSA1O95433 338 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 TXNDC12O95881 172 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 HIST1H2ABP04908 130 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 PAX7P23759 505 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 MAP2K6P52564 334 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 CXADRP78310 365 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 RPL18Q07020 188 aaKnown RBP12.8□□□□□ -0.36
CUX1-209ENST00000487284 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.8□□□□□ -0.36
CUX1-209ENST00000487284 SPHARQ15513 63 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 MED22Q15528 200 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 OR1C1Q15619 314 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 SGCBQ16585 318 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 ARMCX4Q5H9R4 360 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 HIST3H2AQ7L7L0 130 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 WDSUB1Q8N9V3 476 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 CYB561A3Q8NBI2 242 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 PSD4Q8NDX1 1056 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 OR52E2Q8NGJ4 325 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 HIST1H2ACQ93077 130 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 OTULINQ96BN8 352 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 MYCBPQ99417 103 aaPredicted RBP12.8□□□□□ -0.36
CUX1-209ENST00000487284 DDOQ99489 341 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 OR11A1Q9GZK7 315 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 PROK2Q9HC23 129 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 VDAC3Q9Y277 283 aa12.8□□□□□ -0.36
CUX1-209ENST00000487284 TPRP12270 2363 aaKnown RBP12.79□□□□□ -0.36
CUX1-209ENST00000487284 ATMQ13315 3056 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 A0A1W2PPW3 197 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 ANKRD33BA6NCL7 494 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 OR5H15A6NDH6 313 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 FTCDNL1E5RQL4 147 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 OR2T1O43869 369 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 LIMS3P0CW19 117 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 LIMS4P0CW20 117 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms