RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 PMS2P3Q13401 168 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 C1DQ13901 141 aaKnown RBP13.04□□□□□ -0.32
USP4-212ENST00000486549 MFSD13AQ14CX5 517 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 DAZAP2Q15038 168 aaPredicted RBP13.04□□□□□ -0.32
USP4-212ENST00000486549 P2RY6Q15077 328 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 C9orf135Q5VTT2 229 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 RINLQ6ZS11 566 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 CREB3L2Q70SY1 520 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 BHLHA15Q7RTS1 189 aaPredicted RBP13.04□□□□□ -0.32
USP4-212ENST00000486549 WFDC8Q8IUA0 241 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 EPHX4Q8IUS5 362 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 STEAP2Q8NFT2 490 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 OR6S1Q8NH40 331 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 TMEM255BQ8WV15 326 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 TMEM45BQ96B21 275 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 CLEC4MQ9H2X3 399 aaPredicted RBP13.04□□□□□ -0.32
USP4-212ENST00000486549 RASSF1Q9NS23 344 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 RHCGQ9UBD6 479 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 UPB1Q9UBR1 384 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 CD300AQ9UGN4 299 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 MAGEL2Q9UJ55 1249 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 B3GALT5Q9Y2C3 310 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 CORINQ9Y5Q5 1042 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 ANKRD17O75179 2603 aaKnown RBP13.03□□□□□ -0.32
USP4-212ENST00000486549 FZD7O75084 574 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 SERPINI2O75830 405 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 HPRP00739 348 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 MT-ATP6P00846 226 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 THBDP07204 575 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 PPP3CBP16298 524 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 DNAJA1P31689 397 aaKnown RBP13.03□□□□□ -0.32
USP4-212ENST00000486549 IFNA8P32881 189 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 SELENOPP49908 381 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 UGT2B15P54855 530 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 CLDN17P56750 224 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 STK11Q15831 433 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 TSPO2Q5TGU0 170 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 NIPAL3Q6P499 406 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 TRPM8Q7Z2W7 1104 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 UEVLDQ8IX04 471 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 SCAIQ8N9R8 606 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 PFN4Q8NHR9 129 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 OXGR1Q96P68 337 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 ZNF426Q9BUY5 554 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 HDHD5Q9BXW7 423 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 SLCO5A1Q9H2Y9 848 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 SLC7A10Q9NS82 523 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 ASB6Q9NWX5 421 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 B3GAT1Q9P2W7 334 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 ITGB1BP2Q9UKP3 347 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 A4GNTQ9UNA3 340 aa13.03□□□□□ -0.32
USP4-212ENST00000486549 SAMD4AQ9UPU9 718 aaKnown RBP13.03□□□□□ -0.32
USP4-212ENST00000486549 CIB4A0PJX0 185 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 C11orf98E9PRG8 122 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 MS4A18H0YCH9 400 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 ARPC2O15144 300 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 PIP5K1CO60331 668 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 RAD51DO75771 328 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 KRT33AO76009 404 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 OR6A2O95222 327 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 CNOT4O95628 575 aaKnown RBP13.02□□□□□ -0.33
USP4-212ENST00000486549 ADORA3P0DMS8 318 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 T-ENOLP0DO92 83 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 FUT4P22083 530 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 CRYGSP22914 178 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 AHCYP23526 432 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 RBM34P42696 430 aaKnown RBP13.02□□□□□ -0.33
USP4-212ENST00000486549 FOXG1P55316 489 aaPredicted RBP13.02□□□□□ -0.33
USP4-212ENST00000486549 POU3F1Q03052 451 aaPredicted RBP13.02□□□□□ -0.33
USP4-212ENST00000486549 ST3GAL3Q11203 375 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 ZNF74Q16587 644 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 MS4A18Q3C1V0 323 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 LRRC17Q8N6Y2 441 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 ZNF433Q8N7K0 673 aaPredicted RBP13.02□□□□□ -0.33
USP4-212ENST00000486549 FAM86B1Q8N7N1 296 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 ADPRHL1Q8NDY3 354 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 OR5J2Q8NH18 312 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 TMEM239Q8WW34 195 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 NRGNQ92686 78 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 NINJ1Q92982 152 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 PIK3IP1Q96FE7 263 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 NSMCE2Q96MF7 247 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 FNDC11Q9BVV2 318 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 SLC19A3Q9BZV2 496 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 FKRPQ9H9S5 495 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 MEPEQ9NQ76 525 aaPredicted RBP13.02□□□□□ -0.33
USP4-212ENST00000486549 NANSQ9NR45 359 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 DCAF13Q9NV06 445 aaKnown RBP13.02□□□□□ -0.33
USP4-212ENST00000486549 MRPL39Q9NYK5 338 aaKnown RBP13.02□□□□□ -0.33
USP4-212ENST00000486549 MALT1Q9UDY8 824 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 MED31Q9Y3C7 131 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 ABCA4P78363 2273 aa13.02□□□□□ -0.33
USP4-212ENST00000486549 PRR14LQ5THK1 2151 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 FAM221AA4D161 298 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 hCG_2039718K7EN88 272 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 PLPP3O14495 311 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 SIAH2O43255 324 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 PDE5AO76074 875 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 UBOX5O94941 541 aa13.01□□□□□ -0.33
USP4-212ENST00000486549 MT-ND1P03886 318 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms