RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ADORA3P0DMS8 318 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 NR2C1P13056 603 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 ZNF3P17036 446 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 IL11P20809 199 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 PAICSP22234 425 aaKnown RBP9.12□□□□□ -0.95
USP39-215ENST00000481409 NOS3P29474 1203 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 SDHAP31040 664 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 SFTPDP35247 375 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 RPL4P36578 427 aaKnown RBP9.12□□□□□ -0.95
USP39-215ENST00000481409 CD97P48960 835 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 CENPAP49450 140 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 PCYT1AP49585 367 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 DAP3P51398 398 aaKnown RBP9.12□□□□□ -0.95
USP39-215ENST00000481409 OR2B6P58173 313 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 RAP1BP61224 184 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 RAP1AP62834 184 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 MYBPC1Q00872 1141 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 IL5RAQ01344 420 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 RPL18Q07020 188 aaKnown RBP9.12□□□□□ -0.95
USP39-215ENST00000481409 OCLNQ16625 522 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 CTU2Q2VPK5 515 aaKnown RBP9.12□□□□□ -0.95
USP39-215ENST00000481409 RBM48Q5RL73 367 aaKnown RBP9.12□□□□□ -0.95
USP39-215ENST00000481409 TMEM201Q5SNT2 666 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 C1QL3Q5VWW1 255 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 HBMQ6B0K9 141 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 GTF2IRD2BQ6EKJ0 949 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 FAM180AQ6UWF9 173 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 PTCHD4Q6ZW05 846 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 ADCK1Q86TW2 530 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 GTF2IRD2Q86UP8 949 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 GGNQ86UU5 652 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 P3H2Q8IVL5 708 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 SIAH3Q8IW03 269 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 LRRC17Q8N6Y2 441 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 ATP6V1C2Q8NEY4 427 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 OR8D4Q8NGM9 314 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 ZNF417Q8TAU3 575 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 FAM81AQ8TBF8 368 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 HDAC2Q92769 488 aaKnown RBP9.12□□□□□ -0.95
USP39-215ENST00000481409 ZNF566Q969W8 418 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 CNBD2Q96M20 576 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 ADAD1Q96M93 576 aaKnown RBP9.12□□□□□ -0.95
USP39-215ENST00000481409 OXGR1Q96P68 337 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 UBL7Q96S82 380 aaPredicted RBP9.12□□□□□ -0.95
USP39-215ENST00000481409 ZNF587Q96SQ5 575 aaPredicted RBP9.12□□□□□ -0.95
USP39-215ENST00000481409 PLA2G12AQ9BZM1 189 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 TXNIPQ9H3M7 391 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 EXO5Q9H790 373 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 RNF122Q9H9V4 155 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 GP6Q9HCN6 339 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 CLN6Q9NWW5 311 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 TAS2R5Q9NYW4 299 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 GRHPRQ9UBQ7 328 aa9.12□□□□□ -0.95
USP39-215ENST00000481409 MCTS1Q9ULC4 181 aaKnown RBP9.12□□□□□ -0.95
USP39-215ENST00000481409 NCKAP5O14513 1909 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 FREM2Q5SZK8 3169 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 IRGMA1A4Y4 181 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 RIIAD1A6NNX1 92 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 MS4A18H0YCH9 400 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 EIF1AYO14602 144 aaKnown RBP9.11□□□□□ -0.95
USP39-215ENST00000481409 SURF4O15260 269 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 RNF13O43567 381 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 AKAP8O43823 692 aaKnown RBP9.11□□□□□ -0.95
USP39-215ENST00000481409 MRPS14O60783 128 aaKnown RBP9.11□□□□□ -0.95
USP39-215ENST00000481409 TNFAIP8O95379 198 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 SYNGR4O95473 234 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 HOXD4P09016 255 aaPredicted RBP9.11□□□□□ -0.95
USP39-215ENST00000481409 GNAO1P09471 354 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 FCGR2AP12318 317 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 ENPP1P22413 925 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 EPHA2P29317 976 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 PTGER4P35408 488 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 AQP2P41181 271 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 CHN2P52757 468 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 CLDN18P56856 261 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 CTXN1P60606 82 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 RPL27P61353 136 aaKnown RBP9.11□□□□□ -0.95
USP39-215ENST00000481409 KLRB1Q12918 225 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 CDK5R2Q13319 367 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 MAD2L1BPQ15013 274 aaPredicted RBP9.11□□□□□ -0.95
USP39-215ENST00000481409 SNAPC1Q16533 368 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 MS4A18Q3C1V0 323 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 PLEKHN1Q494U1 663 aaPredicted RBP9.11□□□□□ -0.95
USP39-215ENST00000481409 ARMC4Q5T2S8 1044 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 NXNL2Q5VZ03 156 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 TMEM225Q6GV28 225 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 ACSM5Q6NUN0 579 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 CHMP1BQ7LBR1 199 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 FAM122BQ7Z309 247 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 GID4Q8IVV7 300 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 ENTHD1Q8IYW4 607 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 GHDCQ8N2G8 530 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 OR5M1Q8NGP8 315 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 OR10D3Q8NH80 312 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 TMEM163Q8TC26 289 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 ZPLD1Q8TCW7 415 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 RFKQ969G6 155 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 GPR137Q96N19 417 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 ERMAPQ96PL5 475 aaPredicted RBP9.11□□□□□ -0.95
USP39-215ENST00000481409 UCN2Q96RP3 112 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms