RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 TMEM43Q9BTV4 400 aa19.09■□□□□ 0.65
COL9A3-211ENST00000477612 GRIP2Q9C0E4 1043 aa19.09■□□□□ 0.65
COL9A3-211ENST00000477612 CXorf56Q9H5V9 222 aa19.09■□□□□ 0.65
COL9A3-211ENST00000477612 SELENONQ9NZV5 590 aa19.09■□□□□ 0.65
COL9A3-211ENST00000477612 AMDHD2Q9Y303 409 aa19.09■□□□□ 0.65
COL9A3-211ENST00000477612 SLC22A2O15244 555 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 ATP8B1O43520 1251 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 OPN1SWP03999 348 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 CD247P20963 164 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 GTF2E2P29084 291 aaKnown RBP19.08■□□□□ 0.64
COL9A3-211ENST00000477612 MDH1P40925 334 aaKnown RBP19.08■□□□□ 0.64
COL9A3-211ENST00000477612 CRYBA2P53672 197 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 CDH12P55289 794 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 LTBQ06643 244 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 NPTX1Q15818 432 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 REP15Q6BDI9 236 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 TMEM108Q6UXF1 575 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 H1FNTQ75WM6 255 aaPredicted RBP19.08■□□□□ 0.64
COL9A3-211ENST00000477612 KDM8Q8N371 416 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 OR6T1Q8NGN1 323 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 SMAP2Q8WU79 429 aaPredicted RBP19.08■□□□□ 0.64
COL9A3-211ENST00000477612 RASSF5Q8WWW0 418 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 TAMM41Q96BW9 452 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 PERPQ96FX8 193 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 EPYCQ99645 322 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 MCHR1Q99705 422 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 SEC14L4Q9UDX3 406 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 LAMP3Q9UQV4 416 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 RCE1Q9Y256 329 aa19.08■□□□□ 0.64
COL9A3-211ENST00000477612 M0R082 166 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 M0R3H8 397 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 ABCD4O14678 606 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 MRASO14807 208 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 BGLAPP02818 100 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 SOD3P08294 240 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 ZNF43P17038 809 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 GRPRP30550 384 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 RPS4XP62701 263 aaKnown RBP19.07■□□□□ 0.64
COL9A3-211ENST00000477612 VEZF1Q14119 521 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 PGGHGQ32M88 737 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 MMEL1Q495T6 779 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 RABL3Q5HYI8 236 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 KLHL17Q6TDP4 642 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 ANKK1Q8NFD2 765 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 OR4D11Q8NGI4 311 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 ZNF417Q8TAU3 575 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 C10orf82Q8WW14 230 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 C18orf12Q96KH6 178 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 ZNF587Q96SQ5 575 aaPredicted RBP19.07■□□□□ 0.64
COL9A3-211ENST00000477612 PCDHAC1Q9H158 963 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 CISD1Q9NZ45 108 aaKnown RBP19.07■□□□□ 0.64
COL9A3-211ENST00000477612 CORINQ9Y5Q5 1042 aa19.07■□□□□ 0.64
COL9A3-211ENST00000477612 MS4A18H0YCH9 400 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 RPL36A-HNRNPH2H7BZ11 118 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 CHP2O43745 196 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 PAX7P23759 505 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 CD40P25942 277 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 MS4A18Q3C1V0 323 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 ENTPD8Q5MY95 495 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 C9orf135Q5VTT2 229 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 NIPAL3Q6P499 406 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 NHLRC1Q6VVB1 395 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 YTHDF3Q7Z739 585 aaKnown RBP19.06■□□□□ 0.64
COL9A3-211ENST00000477612 SCAIQ8N9R8 606 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 PCYOX1LQ8NBM8 494 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 ZNF583Q96ND8 569 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 ECSITQ9BQ95 431 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 OBP2BQ9NPH6 170 aa19.06■□□□□ 0.64
COL9A3-211ENST00000477612 MAGED1Q9Y5V3 778 aaPredicted RBP19.06■□□□□ 0.64
COL9A3-211ENST00000477612 LOC100653049A0A140TA62 436 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 A0A1W2PR80 420 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 UPK3AO75631 287 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 KRT34O76011 436 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 LYPD3O95274 346 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 THY1P04216 161 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 ZNF83P51522 516 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 CLDN17P56750 224 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 PRPS1P60891 318 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 SLC25A3Q00325 362 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 SF3A3Q12874 501 aaKnown RBP eCLIP19.05■□□□□ 0.648e-7■■■□□ 18.2
COL9A3-211ENST00000477612 ERICH5Q6P6B1 374 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 LINGO2Q7L985 606 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 DTX2Q86UW9 622 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 SNX32Q86XE0 403 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 MAGEE2Q8TD90 523 aaPredicted RBP19.05■□□□□ 0.64
COL9A3-211ENST00000477612 SLC26A7Q8TE54 656 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 GID8Q9NWU2 228 aa19.05■□□□□ 0.64
COL9A3-211ENST00000477612 MRPL39Q9NYK5 338 aaKnown RBP19.05■□□□□ 0.64
COL9A3-211ENST00000477612 ZNF587BE7ETH6 402 aa19.04■□□□□ 0.64
COL9A3-211ENST00000477612 TRAF3IP2O43734 574 aaPredicted RBP19.04■□□□□ 0.64
COL9A3-211ENST00000477612 CD8AP01732 235 aa19.04■□□□□ 0.64
COL9A3-211ENST00000477612 BIVMQ86UB2 503 aa19.04■□□□□ 0.64
COL9A3-211ENST00000477612 RBM45Q8IUH3 476 aaKnown RBP19.04■□□□□ 0.64
COL9A3-211ENST00000477612 OR1K1Q8NGR3 316 aa19.04■□□□□ 0.64
COL9A3-211ENST00000477612 ADAMTS16Q8TE57 1224 aa19.04■□□□□ 0.64
COL9A3-211ENST00000477612 Q96MF0 132 aa19.04■□□□□ 0.64
COL9A3-211ENST00000477612 ZNF426Q9BUY5 554 aa19.04■□□□□ 0.64
COL9A3-211ENST00000477612 TRAF4Q9BUZ4 470 aaPredicted RBP19.04■□□□□ 0.64
COL9A3-211ENST00000477612 CAPN7Q9Y6W3 813 aa19.04■□□□□ 0.64
COL9A3-211ENST00000477612 KRT33AO76009 404 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms