RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TMED7-TICAM2A0A0A6YYA0 188 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 H0YIG0 161 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 FARS2O95363 451 aaKnown RBP13.46□□□□□ -0.26
HDAC6-220ENST00000477528 JMJD7P0C870 316 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 HIST1H1CP16403 213 aaKnown RBP13.46□□□□□ -0.26
HDAC6-220ENST00000477528 DLX2Q07687 328 aaPredicted RBP13.46□□□□□ -0.26
HDAC6-220ENST00000477528 SLC16A9Q7RTY1 509 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 SLC7A5P1Q8MH63 180 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 C16orf52Q8NHV5 167 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 NAT6Q93015 286 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 FOXN4Q96NZ1 517 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 GPR55Q9Y2T6 319 aaPredicted RBP13.46□□□□□ -0.26
HDAC6-220ENST00000477528 TMED7Q9Y3B3 224 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 P2RX6O15547 441 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 ARSBP15848 533 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 SOX18P35713 384 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 PLGLB1Q02325 96 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 HOXB13Q92826 284 aaPredicted RBP13.45□□□□□ -0.26
HDAC6-220ENST00000477528 SYT4Q9H2B2 425 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 FFAR1O14842 300 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 EIF4E2O60573 245 aaKnown RBP13.45□□□□□ -0.26
HDAC6-220ENST00000477528 C1QCP02747 245 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 TFP02787 698 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 AKAIN1P0CW23 69 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 SFTPDP35247 375 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 RRAS2P62070 204 aaPredicted RBP13.45□□□□□ -0.26
HDAC6-220ENST00000477528 BTG2P78543 158 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 POU3F1Q03052 451 aaPredicted RBP13.45□□□□□ -0.26
HDAC6-220ENST00000477528 ALKBH1Q13686 389 aaKnown RBP13.45□□□□□ -0.26
HDAC6-220ENST00000477528 OR4Q3Q8NH05 313 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 SLC19A3Q9BZV2 496 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 ADAM23O75077 832 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 PAHP00439 452 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 DDOSTP39656 456 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 GDNFP39905 211 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 PPICP45877 212 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 MRM1Q6IN84 353 aaKnown RBP13.45□□□□□ -0.26
HDAC6-220ENST00000477528 PPP1R3BQ86XI6 285 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 SYS1Q8N2H4 156 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 GALNT6Q8NCL4 622 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 ZG16BQ96DA0 208 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 SLC41A2Q96JW4 573 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 PATJQ8NI35 1801 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 DIO1P49895 249 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 SSX1Q16384 188 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 AWAT2Q6E213 333 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 FAM109BQ6ICB4 259 aaPredicted RBP13.45□□□□□ -0.26
HDAC6-220ENST00000477528 SLC25A44Q96H78 314 aaPredicted RBP13.45□□□□□ -0.26
HDAC6-220ENST00000477528 ARL6Q9H0F7 186 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 NOX3Q9HBY0 568 aa13.45□□□□□ -0.26
HDAC6-220ENST00000477528 WRBO00258 174 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 RAB3DO95716 219 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 ELK1P19419 428 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 COL9A1P20849 921 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 ETV6P41212 452 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 OR1D5P58170 312 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 ZXDCQ2QGD7 858 aaPredicted RBP13.44□□□□□ -0.26
HDAC6-220ENST00000477528 CCDC58Q4VC31 144 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 TMEM106AQ96A25 262 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 ARSGQ96EG1 525 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 SLC6A14Q9UN76 642 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 TMEM269A0A1B0GVZ9 245 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 A0A1B0GX78 115 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 MT-ATP6P00846 226 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 SRMP19623 302 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 TGM1P22735 817 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 CLDN12P56749 244 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 FXYD6P3P58550 94 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 MESP2Q0VG99 397 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 ZNF628Q5EBL2 1059 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 OVCH1Q7RTY7 1134 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 FAM160A2Q8N612 972 aaPredicted RBP13.44□□□□□ -0.26
HDAC6-220ENST00000477528 ZNF454Q8N9F8 522 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 FOXRED1Q96CU9 486 aaPredicted RBP13.44□□□□□ -0.26
HDAC6-220ENST00000477528 REV1Q9UBZ9 1251 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 SBF1O95248 1867 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 A0A0G2JMP0 313 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 A8MVM7 634 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 SCRG1O75711 98 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 EMDP50402 254 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 FGL1Q08830 312 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 AKIRIN2Q53H80 203 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 FCRL6Q6DN72 434 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 SLC35D2Q76EJ3 337 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 MARCH3Q86UD3 253 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 BEST3Q8N1M1 668 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 OR4M2Q8NGB6 313 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 SLC7A6Q92536 515 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 SLC6A7Q99884 636 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 SRRQ9GZT4 340 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 ADAM18Q9Y3Q7 739 aa13.44□□□□□ -0.26
HDAC6-220ENST00000477528 P04436 131 aa13.43□□□□□ -0.26
HDAC6-220ENST00000477528 SPI1P17947 270 aa13.43□□□□□ -0.26
HDAC6-220ENST00000477528 AGTR1P30556 359 aa13.43□□□□□ -0.26
HDAC6-220ENST00000477528 TGM4P49221 684 aa13.43□□□□□ -0.26
HDAC6-220ENST00000477528 EVX1P49640 407 aa13.43□□□□□ -0.26
HDAC6-220ENST00000477528 GPLD1P80108 840 aa13.43□□□□□ -0.26
HDAC6-220ENST00000477528 C17orf67Q0P5P2 114 aa13.43□□□□□ -0.26
HDAC6-220ENST00000477528 FGFBP1Q14512 234 aa13.43□□□□□ -0.26
HDAC6-220ENST00000477528 FAM205BPQ63HN1 556 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms