RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 GPR171O14626 319 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 HS3ST1O14792 307 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 SMAD7O15105 426 aaKnown RBP6□□□□□ -1.45
CCDC88A-213ENST00000476903 POLR3GO15318 223 aaPredicted RBP6□□□□□ -1.45
CCDC88A-213ENST00000476903 EIF1BO60739 113 aaKnown RBP6□□□□□ -1.45
CCDC88A-213ENST00000476903 TMCC2O75069 709 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 LYZL6O75951 148 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 TFPTP0C1Z6 253 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 ETFAP13804 333 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 CCNA2P20248 432 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 TACR3P29371 465 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 SLC1A3P43003 542 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 MRPL19P49406 292 aaKnown RBP6□□□□□ -1.45
CCDC88A-213ENST00000476903 MVDP53602 400 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 OR2B6P58173 313 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 COPZ1P61923 177 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 SLC35A1P78382 337 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 DGCR2P98153 550 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 CAPRIN1Q14444 709 aaKnown RBP6□□□□□ -1.45
CCDC88A-213ENST00000476903 LARS2Q15031 903 aaKnown RBP6□□□□□ -1.45
CCDC88A-213ENST00000476903 TSC22D1Q15714 1073 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 TAB1Q15750 504 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 MAPK11Q15759 364 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 ZSWIM7Q19AV6 140 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 GTDC1Q4AE62 458 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 Q5PR19 223 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 RNF220Q5VTB9 566 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 PRSS57Q6UWY2 283 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 Q6ZSN1 163 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 BHLHA15Q7RTS1 189 aaPredicted RBP6□□□□□ -1.45
CCDC88A-213ENST00000476903 SSX8Q7RTT4 187 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 UBE2J2Q8N2K1 259 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 OR9I1Q8NGQ6 314 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 OR52P1PQ8NH57 321 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 SLC38A5Q8WUX1 472 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 DYDC1Q8WWB3 177 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 GTF2H4Q92759 462 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 VPS33AQ96AX1 596 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 APH1AQ96BI3 265 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 PERPQ96FX8 193 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 ARL5BQ96KC2 179 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 TMEM204Q9BSN7 226 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 NAA11Q9BSU3 229 aaPredicted RBP6□□□□□ -1.45
CCDC88A-213ENST00000476903 OR11A1Q9GZK7 315 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 RAD21L1Q9H4I0 556 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 CXorf56Q9H5V9 222 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 ESRP2Q9H6T0 727 aaKnown RBP6□□□□□ -1.45
CCDC88A-213ENST00000476903 BARX1Q9HBU1 254 aaPredicted RBP6□□□□□ -1.45
CCDC88A-213ENST00000476903 TCF7L2Q9NQB0 619 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 RLIMQ9NVW2 624 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 TMEM181Q9P2C4 612 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 PRSS50Q9UI38 385 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 OSGIN1Q9UJX0 560 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 TRAPPC4Q9Y296 219 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF443Q9Y2A4 671 aaPredicted RBP6□□□□□ -1.45
CCDC88A-213ENST00000476903 NOSIPQ9Y314 301 aaKnown RBP6□□□□□ -1.45
CCDC88A-213ENST00000476903 TMED7Q9Y3B3 224 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 MTORP42345 2549 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 VPS13CQ709C8 3753 aa6□□□□□ -1.45
CCDC88A-213ENST00000476903 USF3Q68DE3 2245 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 A0A096LPI6 279 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 A0A0G2JPF8 293 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 TMEM72A0PK05 275 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF716A6NP11 495 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 HNRNPCL2B2RXH8 293 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 HNRNPCL3B7ZW38 293 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 CLIC1O00299 241 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 NR5A2O00482 541 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 CLOCKO15516 846 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 HNRNPCL1O60812 293 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 MRPL33O75394 65 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 PLAUP00749 431 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 GPIP06744 558 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 HNRNPCL4P0DMR1 293 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 GGT1P19440 569 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 COX5AP20674 150 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 IGHV1-2P23083 117 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 CXCR1P25024 350 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 ADSLP30566 484 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 PTH2RP49190 550 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 SLC16A1P53985 500 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 IRX1P78414 480 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 H3F3AP84243 136 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 FADDQ13158 208 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 PPA1Q15181 289 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 RGNQ15493 299 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 STK11Q15831 433 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 NRN1LQ496H8 165 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 TTMPQ5BVD1 217 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 TIMM23BQ5SRD1 257 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 NCMAPQ5T1S8 102 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 PRAMEF8Q5VWM4 474 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 PRAMEF7Q5VXH5 474 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 FBXW9Q5XUX1 488 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 WBP2NLQ6ICG8 309 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 ADAM5Q6NVV9 412 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 SLC2A7Q6PXP3 512 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 PAQR6Q6TCH4 344 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 ZNF836Q6ZNA1 936 aa5.99□□□□□ -1.45
CCDC88A-213ENST00000476903 YTHDF3Q7Z739 585 aaKnown RBP5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms