RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	SLC43A1	O75387	559 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	LGI1	O95970	557 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	HIST1H2AB	P04908	130 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	C8B	P07358	591 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	MPG	P29372	298 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	GRPR	P30550	384 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	IFNA8	P32881	189 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	CAPZA2	P47755	286 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	SELENOP	P49908	381 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	CDH12	P55289	794 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	TAS2R41	P59536	307 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	PRPS1	P60891	318 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	PMS2P3	Q13401	168 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	DUSP7	Q16829	419 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	COQ5	Q5HYK3	327 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	ENTPD8	Q5MY95	495 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	CGB2	Q6NT52	195 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	DEF8	Q6ZN54	512 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	CREB3L2	Q70SY1	520 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	HIST3H2A	Q7L7L0	130 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	NET1	Q7Z628	596 aa	Predicted RBP	10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	CPLX4	Q7Z7G2	160 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	UEVLD	Q8IX04	471 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	HIST1H2AC	Q93077	130 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	TAAR8	Q969N4	342 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	RCN3	Q96D15	328 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	TRMT61A	Q96FX7	289 aa	Known RBP	10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	TPD52L3	Q96J77	140 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	OXGR1	Q96P68	337 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	CXXC4	Q9H2H0	198 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	CCDC134	Q9H6E4	229 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	BAG5	Q9UL15	447 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	MGAT4B	Q9UQ53	548 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373	SH3GLB1	Q9Y371	365 aa		10.15	□□□□□ -0.78
CPNE1-222	ENST00000473373		A0A087WUJ7	227 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373		A0A0B4J2E0	115 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373		A0A1B0GX12	115 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	ZNF726	A6NNF4	738 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	C11orf98	E9PRG8	122 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	SLC22A2	O15244	555 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	CHP2	O43745	196 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	ITGA5	P08648	1049 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	PTAFR	P25105	342 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	ATP5J2	P56134	94 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	PCBP3	P57721	371 aa	Known RBP	10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	RPS4X	P62701	263 aa	Known RBP	10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	ADAM8	P78325	824 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	POU3F1	Q03052	451 aa	Predicted RBP	10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	EGR4	Q05215	589 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	CARD17	Q5XLA6	110 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	ZNF613	Q6PF04	617 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	C6orf89	Q6UWU4	347 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	H1FNT	Q75WM6	255 aa	Predicted RBP	10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	ARPIN	Q7Z6K5	226 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	YTHDF3	Q7Z739	585 aa	Known RBP	10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	COMTD1	Q86VU5	262 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	CARM1	Q86X55	608 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	C17orf78	Q8N4C9	275 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	ZNF611	Q8N823	705 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	WFDC11	Q8NEX6	87 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	OR2T12	Q8NG77	320 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	OR6T1	Q8NGN1	323 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	RP9	Q8TA86	221 aa	Known RBP	10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	ADAMTS16	Q8TE57	1224 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	C10orf82	Q8WW14	230 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	LZIC	Q8WZA0	190 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	PIP5K1A	Q99755	562 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	ARHGDIG	Q99819	225 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	ELAC2	Q9BQ52	826 aa	Known RBP	10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	B3GAT2	Q9NPZ5	323 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	CISD1	Q9NZ45	108 aa	Known RBP	10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	SEC14L4	Q9UDX3	406 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	SLC7A7	Q9UM01	511 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	B3GALT5	Q9Y2C3	310 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	BOLA1	Q9Y3E2	137 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	CORIN	Q9Y5Q5	1042 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	ATP23	Q9Y6H3	246 aa		10.14	□□□□□ -0.79
CPNE1-222	ENST00000473373	USF3	Q68DE3	2245 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	TRAPPC13	A5PLN9	417 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	FAM220BP	B1ANY3	271 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	TPST2	O60704	377 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	NPIPB7	O75200	414 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	ADORA3	P0DMS8	318 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	COX4I1	P13073	169 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	LOX	P28300	417 aa	Predicted RBP	10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	NTF4	P34130	210 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	PTH2R	P49190	550 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	NUDT2	P50583	147 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	FOXG1	P55316	489 aa	Predicted RBP	10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	ROR2	Q01974	943 aa	Known RBP	10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	GABRA6	Q16445	453 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	NRF1	Q16656	503 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	ZNF672	Q499Z4	452 aa	Predicted RBP	10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	SWT1	Q5T5J6	900 aa	Known RBP	10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373		Q71RC1	249 aa	Predicted RBP	10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	SPATA21	Q7Z572	469 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	FBXL14	Q8N1E6	418 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	LRRC75A-AS1	Q8N1F1	130 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	PIK3C3	Q8NEB9	887 aa		10.13	□□□□□ -0.79
CPNE1-222	ENST00000473373	C1orf162	Q8NEQ5	155 aa	Predicted RBP	10.13	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms