RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 RGP1Q92546 391 aaPredicted RBP17.39■□□□□ 0.37
VIM-203ENST00000469543 ZC3HAV1LQ96H79 300 aaKnown RBP17.39■□□□□ 0.37
VIM-203ENST00000469543 BEX1Q9HBH7 125 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 MMP25Q9NPA2 562 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 CUTCQ9NTM9 273 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 NUDT15Q9NV35 164 aa17.39■□□□□ 0.37
VIM-203ENST00000469543 MED12Q93074 2177 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 GRK6P43250 576 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 POU4F2Q12837 409 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 ALG10Q5BKT4 473 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 FNDC7Q5VTL7 733 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.38■□□□□ 0.37
VIM-203ENST00000469543 TPRA1Q86W33 373 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 LSM14AQ8ND56 463 aaKnown RBP17.38■□□□□ 0.37
VIM-203ENST00000469543 TAAR8Q969N4 342 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 ZNF285Q96NJ3 590 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 NMNAT2Q9BZQ4 307 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 AUNIPQ9H7T9 357 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 RNF215Q9Y6U7 377 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 FER1L5A0AVI2 2057 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 A0A0A6YYJ9 748 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 SCDO00767 359 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 PLGP00747 810 aaPredicted RBP17.38■□□□□ 0.37
VIM-203ENST00000469543 SRMP19623 302 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 RPL6Q02878 288 aaKnown RBP17.38■□□□□ 0.37
VIM-203ENST00000469543 GRM7Q14831 915 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.38■□□□□ 0.37
VIM-203ENST00000469543 OR5M10Q6IEU7 315 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 GKN2Q86XP6 184 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 NKX3-1Q99801 234 aaPredicted RBP17.38■□□□□ 0.37
VIM-203ENST00000469543 WDR76Q9H967 626 aa17.38■□□□□ 0.37
VIM-203ENST00000469543 METTL12A8MUP2 240 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 C11orf98E9PRG8 122 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 FLRT2O43155 660 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 ZNF264O43296 627 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 HCRTR2O43614 444 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 NUDT14O95848 222 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 ITPKBP27987 946 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 HLA-DMAP28067 261 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 SOX2P48431 317 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 SKP1P63208 163 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 RPL18Q07020 188 aaKnown RBP17.37■□□□□ 0.37
VIM-203ENST00000469543 WBP2NLQ6ICG8 309 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 FAM122BQ7Z309 247 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 OR6V1Q8N148 313 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 ASCC1Q8N9N2 400 aaKnown RBP17.37■□□□□ 0.37
VIM-203ENST00000469543 BEST4Q8NFU0 473 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 LGALS14Q8TCE9 139 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 NUDT9Q9BW91 350 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 IGHV3-20A0A0C4DH32 117 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 FAM47E-STBD1D6RA91 191 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 IFI6P09912 130 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 FOLR1P15328 257 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 CD27P26842 260 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 RBMS1P29558 406 aaKnown RBP17.37■□□□□ 0.37
VIM-203ENST00000469543 NR0B1P51843 470 aaKnown RBP17.37■□□□□ 0.37
VIM-203ENST00000469543 NTRK2Q16620 822 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 PLA1AQ53H76 456 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 POMGNT2Q8NAT1 580 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 DNAAF1Q8NEP3 725 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 ZNF671Q8TAW3 534 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 MS4A3Q96HJ5 214 aa17.37■□□□□ 0.37
VIM-203ENST00000469543 C2orf72A6NCS6 295 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 TLCD2A6NGC4 264 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 RGS13O14921 159 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 ARPC3O15145 178 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 GIFP27352 417 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 ZNF117Q03924 483 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 GGTLC2Q14390 218 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 NSDHLQ15738 373 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 SIAH3Q8IW03 269 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 OR1L3Q8NH93 324 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 FAM174AQ8TBP5 190 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 YIPF5Q969M3 257 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 SLC25A36Q96CQ1 311 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 ULBP3Q9BZM4 244 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 SYT4Q9H2B2 425 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 KLHL21Q9UJP4 597 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 CACNG2Q9Y698 323 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 RHPN2P1A8MT19 583 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 NOTOA8MTQ0 251 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 H3BMH7 237 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 UCHL1P09936 223 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 ACTA2P62736 377 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 RPS15P62841 145 aaKnown RBP17.36■□□□□ 0.37
VIM-203ENST00000469543 ACTG2P63267 376 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 HSD17B12Q53GQ0 312 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 RPL22L1Q6P5R6 122 aaKnown RBP17.36■□□□□ 0.37
VIM-203ENST00000469543 CMIPQ8IY22 773 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 FAM71CQ8NEG0 241 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 OR10AC1Q8NH08 325 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 ZNF721Q8TF20 911 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 PRODH2Q9UF12 536 aa17.36■□□□□ 0.37
VIM-203ENST00000469543 ORC5O43913 435 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 SLC43A1O75387 559 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 PPM1BO75688 479 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 DDAH2O95865 285 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 MT-ND4P03905 459 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 CD53P19397 219 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms