RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 THOC1Q96FV9 657 aaKnown RBP12.22□□□□□ -0.45
USP4-206ENST00000461553 KCNS3Q9BQ31 491 aa12.22□□□□□ -0.45
USP4-206ENST00000461553 VIPAS39Q9H9C1 493 aa12.22□□□□□ -0.45
USP4-206ENST00000461553 SLC52A3Q9NQ40 469 aa12.22□□□□□ -0.45
USP4-206ENST00000461553 RCE1Q9Y256 329 aa12.22□□□□□ -0.45
USP4-206ENST00000461553 ATP23Q9Y6H3 246 aa12.22□□□□□ -0.45
USP4-206ENST00000461553 TRAV36DV7A0A075B6V5 113 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 GPX2P18283 190 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 PTNP21246 168 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 NUDT6P53370 316 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 SH3BGRP55822 239 aaPredicted RBP12.21□□□□□ -0.45
USP4-206ENST00000461553 CLDN17P56750 224 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 UBE2NP61088 152 aaKnown RBP12.21□□□□□ -0.45
USP4-206ENST00000461553 DMTNQ08495 405 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 TBRG1Q3YBR2 411 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 HIKESHIQ53FT3 197 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 FAM91A1Q658Y4 838 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 C11orf71Q6IPW1 123 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 HMBOX1Q6NT76 420 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 ULK3Q6PHR2 472 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 RANBP3LQ86VV4 465 aaPredicted RBP12.21□□□□□ -0.45
USP4-206ENST00000461553 ARMC8Q8IUR7 673 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 EPHX4Q8IUS5 362 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 OR1K1Q8NGR3 316 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 EPYCQ99645 322 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 SIKE1Q9BRV8 207 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 EVA1AQ9H8M9 152 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 NPHS2Q9NP85 383 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 GDF2Q9UK05 429 aaPredicted RBP12.21□□□□□ -0.45
USP4-206ENST00000461553 B3GALT5Q9Y2C3 310 aa12.21□□□□□ -0.45
USP4-206ENST00000461553 INAFM1C9JVW0 142 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 ATP6V1G2-DDX39BF2Z307 99 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 M0R082 166 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 FZD7O75084 574 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 NDUFS7O75251 213 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 SLC43A1O75387 559 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 LGI1O95970 557 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 BMP4P12644 408 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 PAX7P23759 505 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 LGALS3BPQ08380 585 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 C1DQ13901 141 aaKnown RBP12.2□□□□□ -0.46
USP4-206ENST00000461553 MFSD13AQ14CX5 517 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 GLIPR1L2Q4G1C9 344 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 COMTD1Q86VU5 262 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 KDM8Q8N371 416 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 C11orf65Q8NCR3 313 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 ZNF417Q8TAU3 575 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 SLC47A1Q96FL8 570 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 BOD1Q96IK1 185 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 OXGR1Q96P68 337 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 ZNF317Q96PQ6 595 aaPredicted RBP12.2□□□□□ -0.46
USP4-206ENST00000461553 ZNF587Q96SQ5 575 aaPredicted RBP12.2□□□□□ -0.46
USP4-206ENST00000461553 REG4Q9BYZ8 158 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 LINC00470Q9BZP3 86 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 TMEM27Q9HBJ8 222 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 MOV10Q9HCE1 1003 aaKnown RBP12.2□□□□□ -0.46
USP4-206ENST00000461553 KLHL14Q9P2G3 628 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 SEC14L4Q9UDX3 406 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 NDUFAF1Q9Y375 327 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 DNHD1Q96M86 4753 aa12.2□□□□□ -0.46
USP4-206ENST00000461553 YLPM1P49750 1951 aaKnown RBP12.19□□□□□ -0.46
USP4-206ENST00000461553 IGKV1D-42A0A075B6H8 117 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 A0A0B4J2E0 115 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 A0A0G2JND7 137 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 A0A1B0GX12 115 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 SSX4O60224 188 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 TPST1O60507 370 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 UPK3AO75631 287 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 TP53P04637 393 aaPredicted RBP12.19□□□□□ -0.46
USP4-206ENST00000461553 NQO1P15559 274 aaKnown RBP12.19□□□□□ -0.46
USP4-206ENST00000461553 GRPRP30550 384 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 MTPNP58546 118 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 ROR2Q01974 943 aaKnown RBP12.19□□□□□ -0.46
USP4-206ENST00000461553 NFYCQ13952 458 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 RUNDC3AQ59EK9 446 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 SWT1Q5T5J6 900 aaKnown RBP12.19□□□□□ -0.46
USP4-206ENST00000461553 CLEC2AQ6UVW9 174 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 DLEU7Q6UYE1 221 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 NET1Q7Z628 596 aaPredicted RBP12.19□□□□□ -0.46
USP4-206ENST00000461553 GPR137CQ8N3F9 429 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 DPP10Q8N608 796 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 MAPK1IP1LQ8NDC0 245 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 ADPRHL1Q8NDY3 354 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 TAAR8Q969N4 342 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 SLC38A2Q96QD8 506 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 ASPNQ9BXN1 380 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 ZNF385DQ9H6B1 395 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 B3GAT1Q9P2W7 334 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 CORINQ9Y5Q5 1042 aa12.19□□□□□ -0.46
USP4-206ENST00000461553 RTTNQ86VV8 2226 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 A0A087WUJ7 227 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 ARPC4-TTLL3A0A0A6YYG9 625 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 H7C417 338 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 EDF1O60869 148 aaKnown RBP12.18□□□□□ -0.46
USP4-206ENST00000461553 H2AFXP16104 143 aaPredicted RBP12.18□□□□□ -0.46
USP4-206ENST00000461553 PCBP3P57721 371 aaKnown RBP12.18□□□□□ -0.46
USP4-206ENST00000461553 CHRNB3Q05901 458 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 RBBP4Q09028 425 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 RAB35Q15286 201 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 OR1Q1Q15612 314 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms