RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 PRKACGP22612 351 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 GRPRP30550 384 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 CEACAM8P31997 349 aaPredicted RBP11.63□□□□□ -0.55
VPS33A-202ENST00000451053 TIMP3P35625 211 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 AGFG1P52594 562 aaKnown RBP11.63□□□□□ -0.55
VPS33A-202ENST00000451053 CTBP2P56545 445 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 PRKCDQ05655 676 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 SRSF1Q07955 248 aaKnown RBP eCLIP11.63□□□□□ -0.55
VPS33A-202ENST00000451053 COX10Q12887 443 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 RIPPLY2Q5TAB7 128 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 KDM4DQ6B0I6 523 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 C1orf94Q6P1W5 598 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 PGBD2Q6P3X8 592 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 SLC46A3Q7Z3Q1 461 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 MEX3DQ86XN8 651 aaKnown RBP11.63□□□□□ -0.55
VPS33A-202ENST00000451053 CCDC103Q8IW40 242 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 NRMQ8IXM6 262 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 GCNT2Q8N0V5 402 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 C10orf53Q8N6V4 93 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 TMEM99Q8N816 258 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 OR6S1Q8NH40 331 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 ABHD3Q8WU67 409 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 INTS12Q96CB8 462 aaKnown RBP11.63□□□□□ -0.55
VPS33A-202ENST00000451053 ZHX1-C8orf76Q96EF9 292 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 TM9SF2Q99805 663 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 RNF122Q9H9V4 155 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 SMURF2Q9HAU4 748 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 PAPOLBQ9NRJ5 636 aaKnown RBP11.63□□□□□ -0.55
VPS33A-202ENST00000451053 KLHL13Q9P2N7 655 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 Q9UFV3 132 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 CLEC4AQ9UMR7 237 aa11.63□□□□□ -0.55
VPS33A-202ENST00000451053 PHF3Q92576 2039 aaKnown RBP11.63□□□□□ -0.55
VPS33A-202ENST00000451053 AQP7P3A6NL99 342 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 M0R082 166 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 EIF1BO60739 113 aaKnown RBP11.62□□□□□ -0.55
VPS33A-202ENST00000451053 CYTIPO60759 359 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 ZG16O60844 167 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 RCBTB2O95199 551 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 IL2RAP01589 272 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 IFI30P13284 250 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 FPR3P25089 353 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 DAPP51397 102 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 P2RY4P51582 365 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 AQP4P55087 323 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 PER3P56645 1201 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 H3F3AP84243 136 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 FOXF2Q12947 444 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 TSPAN31Q12999 210 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 TAF11Q15544 211 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 ZNF74Q16587 644 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 ABLIM2Q6H8Q1 611 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 PAQR6Q6TCH4 344 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 CD300LDQ6UXZ3 194 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 CCDC71Q8IV32 467 aaPredicted RBP11.62□□□□□ -0.55
VPS33A-202ENST00000451053 PARP8Q8N3A8 854 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 ZNF417Q8TAU3 575 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 RND1Q92730 232 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 SGTBQ96EQ0 304 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 ZNF587Q96SQ5 575 aaPredicted RBP11.62□□□□□ -0.55
VPS33A-202ENST00000451053 NAA11Q9BSU3 229 aaPredicted RBP11.62□□□□□ -0.55
VPS33A-202ENST00000451053 UCK2Q9BZX2 261 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 Q9H521 79 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 ING1Q9UK53 422 aaPredicted RBP11.62□□□□□ -0.55
VPS33A-202ENST00000451053 RNF6Q9Y252 685 aa11.62□□□□□ -0.55
VPS33A-202ENST00000451053 PRRC2CQ9Y520 2896 aaKnown RBP11.62□□□□□ -0.55
VPS33A-202ENST00000451053 OR7A10O76100 309 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 MT-ATP6P00846 226 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 GASTP01350 101 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 RNF224P0DH78 156 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 TMIGD3P0DMS9 266 aaPredicted RBP11.61□□□□□ -0.55
VPS33A-202ENST00000451053 GTF2E2P29084 291 aaKnown RBP11.61□□□□□ -0.55
VPS33A-202ENST00000451053 OMPP47874 163 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 IL1RL1Q01638 556 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 RASGEF1BQ0VAM2 473 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 GUSBP1Q15486 140 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 OR2A2Q6IF42 318 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 RPL13AP3Q6NVV1 102 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 MTFR2Q6P444 385 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 TMPRSS11FQ6ZWK6 438 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 MAMDC2Q7Z304 686 aaPredicted RBP11.61□□□□□ -0.55
VPS33A-202ENST00000451053 ZER1Q7Z7L7 766 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 MCEMP1Q8IX19 187 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 SLC43A2Q8N370 569 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 DHRSXQ8N5I4 330 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 LRRC17Q8N6Y2 441 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 ZNF555Q8NEP9 628 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 GTPBP3Q969Y2 492 aaKnown RBP11.61□□□□□ -0.55
VPS33A-202ENST00000451053 BPIFA2Q96DR5 249 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 FAM46AQ96IP4 442 aaKnown RBP11.61□□□□□ -0.55
VPS33A-202ENST00000451053 ASPNQ9BXN1 380 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 GABARAPL3Q9BY60 117 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 FKRPQ9H9S5 495 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 CHST11Q9NPF2 352 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 TMEFF2Q9UIK5 374 aaPredicted RBP11.61□□□□□ -0.55
VPS33A-202ENST00000451053 RAB26Q9ULW5 256 aa11.61□□□□□ -0.55
VPS33A-202ENST00000451053 DOCK7Q96N67 2140 aa11.6□□□□□ -0.55
VPS33A-202ENST00000451053 A0A1W2PNV4 684 aa11.6□□□□□ -0.55
VPS33A-202ENST00000451053 ZNF716A6NP11 495 aa11.6□□□□□ -0.55
VPS33A-202ENST00000451053 HSPB2A8KAH6 182 aa11.6□□□□□ -0.55
VPS33A-202ENST00000451053 EFCAB9A8MZ26 197 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms