RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 ZNF442Q9H7R0 627 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 PNPOQ9NVS9 261 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 AIG1Q9NVV5 245 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 TMEFF2Q9UIK5 374 aaPredicted RBP11.55□□□□□ -0.56
HMGB3-204ENST00000448905 RCE1Q9Y256 329 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 SH3PXD2BA1X283 911 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 SLCO1B7G3V0H7 640 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 hCG_2039718K7EN88 272 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 AKAP8O43823 692 aaKnown RBP11.54□□□□□ -0.56
HMGB3-204ENST00000448905 UPK3AO75631 287 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 IGLV1-44P01699 117 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 ZCCHC18P0CG32 403 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 IDO1P14902 403 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 BGNP21810 368 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 GIFP27352 417 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 THBS4P35443 961 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 CDKN2CP42773 168 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 CLDN17P56750 224 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 DSTNP60981 165 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 ARF1P84077 181 aaKnown RBP11.54□□□□□ -0.56
HMGB3-204ENST00000448905 PDCD4Q53EL6 469 aaKnown RBP11.54□□□□□ -0.56
HMGB3-204ENST00000448905 ZNF311Q5JNZ3 666 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 HHATQ5VTY9 493 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 ATG16L1Q676U5 607 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 NXNQ6DKJ4 435 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 C5orf46Q6UWT4 87 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 SPATA21Q7Z572 469 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 CROCCP2Q86T23 111 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 ZNF786Q8N393 782 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 PIK3C3Q8NEB9 887 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 UBASH3BQ8TF42 649 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 SLC38A5Q8WUX1 472 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 SLC35B4Q969S0 331 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 ITCHQ96J02 903 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 OXGR1Q96P68 337 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 DOK1Q99704 481 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 DYNLRB1Q9NP97 96 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 ZNF443Q9Y2A4 671 aaPredicted RBP11.54□□□□□ -0.56
HMGB3-204ENST00000448905 CMAHPQ9Y471 501 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 GPR45Q9Y5Y3 372 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 ALPK2Q86TB3 2170 aa11.54□□□□□ -0.56
HMGB3-204ENST00000448905 TMEM229AB2RXF0 380 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 HDAC3O15379 428 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 FRS3O43559 492 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 NPIPB7O75200 414 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 IGKV3-15P01624 115 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 C1QCP02747 245 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 BCHEP06276 602 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 ETFAP13804 333 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 IFNGR1P15260 489 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 APEX1P27695 318 aaKnown RBP11.53□□□□□ -0.56
HMGB3-204ENST00000448905 RPS5P46782 204 aaKnown RBP11.53□□□□□ -0.56
HMGB3-204ENST00000448905 CAPZA2P47755 286 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 P2RY4P51582 365 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 IL1RL1Q01638 556 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 SCGB2A2Q13296 93 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 ZNF836Q6ZNA1 936 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 SNX32Q86XE0 403 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 KDM8Q8N371 416 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 CLIP4Q8N3C7 705 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 AENQ8WTP8 325 aaKnown RBP11.53□□□□□ -0.56
HMGB3-204ENST00000448905 ALKBH3Q96Q83 286 aaPredicted RBP11.53□□□□□ -0.56
HMGB3-204ENST00000448905 MS4A5Q9H3V2 200 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 RAD21L1Q9H4I0 556 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 TPT1P8Q9HAU6 139 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 CRLF2Q9HC73 371 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 THAP1Q9NVV9 213 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 SELENONQ9NZV5 590 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 USP22Q9UPT9 525 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 NOX1Q9Y5S8 564 aa11.53□□□□□ -0.56
HMGB3-204ENST00000448905 YLPM1P49750 1951 aaKnown RBP11.53□□□□□ -0.56
HMGB3-204ENST00000448905 LOC102725191A0A1B0GVB3 256 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 LRP5LA4QPB2 252 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 C5orf58C9J3I9 102 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 AIM2O14862 343 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 TACSTD2P09758 323 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 ALDOCP09972 364 aaKnown RBP11.52□□□□□ -0.57
HMGB3-204ENST00000448905 PNMTP11086 282 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 PRG2P13727 222 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 EPHA3P29320 983 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 IL12AP29459 219 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 EVX1P49640 407 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 TUBA1BP68363 451 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 TUBA4AP68366 448 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 HGFACQ04756 655 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 LGALS3BPQ08380 585 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 DAG1Q14118 895 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 MFSD13AQ14CX5 517 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 ADRM1Q16186 407 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 REP15Q6BDI9 236 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 WDR93Q6P2C0 686 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 MSANTD1Q6ZTZ1 278 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 TUBA1AQ71U36 451 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 H1FNTQ75WM6 255 aaPredicted RBP11.52□□□□□ -0.57
HMGB3-204ENST00000448905 SVOPLQ8N434 492 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 CKAP2Q8WWK9 683 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 WDR55Q9H6Y2 383 aaPredicted RBP11.52□□□□□ -0.57
HMGB3-204ENST00000448905 C12orf10Q9HB07 376 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 GPR35Q9HC97 309 aa11.52□□□□□ -0.57
HMGB3-204ENST00000448905 B3GAT2Q9NPZ5 323 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 134.4 ms