RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 MTHFD2LQ9H903 347 aaPredicted RBP3.49□□□□□ -1.85
VPS29-202ENST00000447578 NMUR1Q9HB89 426 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 BATF3Q9NR55 127 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 NDE1Q9NXR1 346 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 STX18Q9P2W9 335 aaKnown RBP3.49□□□□□ -1.85
VPS29-202ENST00000447578 SLC2A6Q9UGQ3 507 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 SLC7A8Q9UHI5 535 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 B9D1Q9UPM9 204 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 NEU3Q9UQ49 428 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 PRG3Q9Y2Y8 225 aaPredicted RBP3.49□□□□□ -1.85
VPS29-202ENST00000447578 ACOT9Q9Y305 439 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 OR10H1Q9Y4A9 318 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 LRRC42Q9Y546 428 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 ASB3Q9Y575 518 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 KLF2Q9Y5W3 355 aaPredicted RBP3.49□□□□□ -1.85
VPS29-202ENST00000447578 MGAMO43451 1857 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 A0A087WW49 117 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 IGKV3D-20A0A0C4DH25 116 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 A0A0J9YVX5 310 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 LOC390937A0A1W2PQ73 354 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 WASHC1A8K0Z3 465 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 NPIPA2E9PIF3 369 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 NPIPB9F8W1W9 429 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 SLCO1B7G3V0H7 640 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 EI24O14681 340 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 AIM2O14862 343 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 LIN7AO14910 233 aaPredicted RBP3.48□□□□□ -1.85
VPS29-202ENST00000447578 HDAC3O15379 428 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 DCXO43602 365 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 FKBP6O75344 327 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 SORBS2O94875 1100 aaKnown RBP3.48□□□□□ -1.85
VPS29-202ENST00000447578 IGHEP01854 428 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 MT-ND1P03886 318 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 FHP07954 510 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 SLC35E2BP0CK96 405 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 PRSS56P0CW18 603 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 THRAP10827 490 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 COX4I1P13073 169 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 CEBPBP17676 345 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 CRABP2P29373 138 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 CA8P35219 290 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 SERPINB5P36952 375 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 SLC1A2P43004 574 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 PTGER3P43115 390 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 ZFP36L2P47974 494 aaKnown RBP3.48□□□□□ -1.85
VPS29-202ENST00000447578 CD151P48509 253 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 RGS4P49798 205 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 NUDT2P50583 147 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 RPL14P50914 215 aaKnown RBP3.48□□□□□ -1.85
VPS29-202ENST00000447578 KPNA2P52292 529 aaKnown RBP3.48□□□□□ -1.85
VPS29-202ENST00000447578 TAS2R39P59534 338 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 ACTR3P61158 418 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 ASPHQ12797 758 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 EIF4EBP2Q13542 120 aaPredicted RBP3.48□□□□□ -1.85
VPS29-202ENST00000447578 SELPLGQ14242 412 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 HAGHQ16775 308 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 MS4A13Q5J8X5 152 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 MARC1Q5VT66 337 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 METTL21CQ5VZV1 264 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 SEL1L3Q68CR1 1132 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 ZNF470Q6ECI4 717 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 NEPROQ6NW34 567 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 MFSD6LQ8IWD5 586 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 DEFB107AQ8IZN7 70 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 ARHGAP18Q8N392 663 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 CCNYL1Q8N7R7 359 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 FBXO32Q969P5 355 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 CCDC124Q96CT7 223 aaKnown RBP3.48□□□□□ -1.85
VPS29-202ENST00000447578 CMTM5Q96DZ9 223 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 CAPNS2Q96L46 248 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 SERPINB11Q96P15 392 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 CATSPER2Q96P56 530 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 ALKBH3Q96Q83 286 aaPredicted RBP3.48□□□□□ -1.85
VPS29-202ENST00000447578 PSKH2Q96QS6 385 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 OR52B2Q96RD2 323 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 ZBTB18Q99592 522 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 OMDQ99983 421 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 EDEM2Q9BV94 578 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 ZYG11BQ9C0D3 744 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 FBXO44Q9H4M3 255 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 ALG9Q9H6U8 611 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 WDR55Q9H6Y2 383 aaPredicted RBP3.48□□□□□ -1.85
VPS29-202ENST00000447578 MRM3Q9HC36 420 aaKnown RBP3.48□□□□□ -1.85
VPS29-202ENST00000447578 NT5MQ9NPB1 228 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 FANCFQ9NPI8 374 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 RGS18Q9NS28 235 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 TREX1Q9NSU2 369 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 C1orf123Q9NWV4 160 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 GPR83Q9NYM4 423 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 C6orf203Q9P0P8 240 aaPredicted RBP3.48□□□□□ -1.85
VPS29-202ENST00000447578 GHRLQ9UBU3 117 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 FBXO5Q9UKT4 447 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 IKZF3Q9UKT9 509 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 PPP1R3CQ9UQK1 317 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 SCML2Q9UQR0 700 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 MRPS33Q9Y291 106 aaKnown RBP3.48□□□□□ -1.85
VPS29-202ENST00000447578 SLC9A8Q9Y2E8 581 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 FIS1Q9Y3D6 152 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 CSNK1G3Q9Y6M4 447 aa3.48□□□□□ -1.85
VPS29-202ENST00000447578 MCM3APO60318 1980 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms