RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 OR51A7Q8NH64 312 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 RNF128Q8TEB7 428 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 DNAJC9Q8WXX5 260 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 GTPBP3Q969Y2 492 aaKnown RBP14.09□□□□□ -0.15
USP40-206ENST00000443711 OXGR1Q96P68 337 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 TNFRSF13CQ96RJ3 184 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 GPA33Q99795 319 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 VKORC1Q9BQB6 163 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 TTYH2Q9BSA4 534 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 SF3B5Q9BWJ5 86 aaKnown RBP14.09□□□□□ -0.15
USP40-206ENST00000443711 UCK2Q9BZX2 261 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 NDEL1Q9GZM8 345 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 GABARAPL1Q9H0R8 117 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 RNPEPL1Q9HAU8 725 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 GLRX2Q9NS18 164 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 KIF17Q9P2E2 1029 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 SEC14L4Q9UDX3 406 aa14.09□□□□□ -0.15
USP40-206ENST00000443711 MYO7BQ6PIF6 2116 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 TRAV27A0A087WT01 109 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 LOC102725191A0A1B0GVB3 256 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 MBD3L4A6NDZ8 208 aaPredicted RBP14.08□□□□□ -0.16
USP40-206ENST00000443711 MBD3L3A6NE82 208 aaPredicted RBP14.08□□□□□ -0.16
USP40-206ENST00000443711 MBD3L5A6NJ08 208 aaPredicted RBP14.08□□□□□ -0.16
USP40-206ENST00000443711 KDM4EB2RXH2 506 aaPredicted RBP14.08□□□□□ -0.16
USP40-206ENST00000443711 ZNF814B7Z6K7 855 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 MS4A18H0YCH9 400 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 PTP4A3O75365 173 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 RCBTB2O95199 551 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 IL2RAP01589 272 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 TIMP3P35625 211 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 PRPS1P60891 318 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 IL1RL1Q01638 556 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 PUDPQ08623 228 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 PDK3Q15120 406 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 MS4A18Q3C1V0 323 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 FAHD1Q6P587 224 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 MBD3L2Q8NHZ7 208 aaPredicted RBP14.08□□□□□ -0.16
USP40-206ENST00000443711 PRR7Q8TB68 274 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 CIB1Q99828 191 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 C9orf16Q9BUW7 83 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 RNF122Q9H9V4 155 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 GP6Q9HCN6 339 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 TAS2R5Q9NYW4 299 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 KLHL9Q9P2J3 617 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 KLHL13Q9P2N7 655 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 SIGLEC7Q9Y286 467 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 HIF3AQ9Y2N7 669 aa14.08□□□□□ -0.16
USP40-206ENST00000443711 A0A1B0GUH1 482 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 A0A1W2PNV4 684 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 PDLIM1O00151 329 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 CCL21O00585 134 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 GPR171O14626 319 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 RNF13O43567 381 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 RAMP1O60894 148 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 PLGP00747 810 aaPredicted RBP14.07□□□□□ -0.16
USP40-206ENST00000443711 TSPAN19P0C672 248 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 GLI4P10075 376 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 AHCYP23526 432 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 UQCRC1P31930 480 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 AQP2P41181 271 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 SLC16A1P53985 500 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 PER3P56645 1201 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 RPS4XP62701 263 aaKnown RBP14.07□□□□□ -0.16
USP40-206ENST00000443711 SLC34A1Q06495 639 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 RPL18Q07020 188 aaKnown RBP14.07□□□□□ -0.16
USP40-206ENST00000443711 C1DQ13901 141 aaKnown RBP14.07□□□□□ -0.16
USP40-206ENST00000443711 SLC17A1Q14916 467 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 TRIP10Q15642 601 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 EIF2S3LQ2VIR3 472 aaKnown RBP14.07□□□□□ -0.16
USP40-206ENST00000443711 RPL13AP3Q6NVV1 102 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 RASSF6Q6ZTQ3 369 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 SEM1Q6ZVN7 128 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 PXKQ7Z7A4 578 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 GPAT4Q86UL3 456 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 KDM8Q8N371 416 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 C9orf106Q8NAJ2 232 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 ABHD3Q8WU67 409 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 EME1Q96AY2 570 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 ZFP3Q96NJ6 502 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 NIPSNAP1Q9BPW8 284 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 RBM4BQ9BQ04 359 aaKnown RBP14.07□□□□□ -0.16
USP40-206ENST00000443711 TACO1Q9BSH4 297 aaKnown RBP14.07□□□□□ -0.16
USP40-206ENST00000443711 RBM4Q9BWF3 364 aaKnown RBP14.07□□□□□ -0.16
USP40-206ENST00000443711 SMURF2Q9HAU4 748 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 MCCC2Q9HCC0 563 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 FANCFQ9NPI8 374 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 EMC3Q9P0I2 261 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 NKX1-2Q9UD57 310 aaPredicted RBP14.07□□□□□ -0.16
USP40-206ENST00000443711 MEMO1Q9Y316 297 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 NOX1Q9Y5S8 564 aa14.07□□□□□ -0.16
USP40-206ENST00000443711 IGKV3D-15A0A087WSY6 115 aa14.06□□□□□ -0.16
USP40-206ENST00000443711 ZNF716A6NP11 495 aa14.06□□□□□ -0.16
USP40-206ENST00000443711 C11orf98E9PRG8 122 aa14.06□□□□□ -0.16
USP40-206ENST00000443711 NDUFB2O95178 105 aa14.06□□□□□ -0.16
USP40-206ENST00000443711 ATP6V1G2O95670 118 aa14.06□□□□□ -0.16
USP40-206ENST00000443711 HPRP00739 348 aa14.06□□□□□ -0.16
USP40-206ENST00000443711 CRHP06850 196 aa14.06□□□□□ -0.16
USP40-206ENST00000443711 ZNF43P17038 809 aa14.06□□□□□ -0.16
USP40-206ENST00000443711 CEACAM8P31997 349 aaPredicted RBP14.06□□□□□ -0.16
USP40-206ENST00000443711 UQCRFS1P47985 274 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms