RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 MRPL45Q9BRJ2 306 aaKnown RBP2.41□□□□□ -2.02
VPS41-207ENST00000439468 POLR2J2Q9GZM3 115 aaKnown RBP2.41□□□□□ -2.02
VPS41-207ENST00000439468 POLR2J3Q9H1A7 115 aaKnown RBP2.41□□□□□ -2.02
VPS41-207ENST00000439468 RBKSQ9H477 322 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 REEP4Q9H6H4 257 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 NARFLQ9H6Q4 476 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 SUDS3Q9H7L9 328 aaPredicted RBP2.41□□□□□ -2.02
VPS41-207ENST00000439468 LRRC40Q9H9A6 602 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 FOLH1BQ9HBA9 442 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 AIG1Q9NVV5 245 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 TRAF3IP3Q9Y228 551 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 ASB3Q9Y575 518 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 V9GY05 133 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 EFCAB6Q5THR3 1501 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 PDE4DIPQ5VU43 2346 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 PLCH2O75038 1416 aa2.41□□□□□ -2.02
VPS41-207ENST00000439468 BTBD17A6NE02 478 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 F5H6K3 240 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 PANO1I0J062 215 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 HIP1O00291 1037 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 CXCL11O14625 94 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 ABCD4O14678 606 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 HSD17B6O14756 317 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 PRKAB2O43741 272 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 TIMM8AO60220 97 aaPredicted RBP2.4□□□□□ -2.03
VPS41-207ENST00000439468 HSMCR30P0CW71 290 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 CALRP27797 417 aaKnown RBP2.4□□□□□ -2.03
VPS41-207ENST00000439468 SHMT2P34897 504 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 UGT1A5P35504 534 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 DDOSTP39656 456 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 HNRNPA3P51991 378 aaKnown RBP2.4□□□□□ -2.03
VPS41-207ENST00000439468 SEC61GP60059 68 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 CDK16Q00536 496 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 TLE4Q04727 773 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 KLRC3Q07444 240 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 ZNF763Q0D2J5 394 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 RIPK1Q13546 671 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 ARL6IP1Q15041 203 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 DPYSL2Q16555 572 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 CCDC14Q49A88 953 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 CEP55Q53EZ4 464 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 C1orf146Q5VVC0 180 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 OTPQ5XKR4 325 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 OR2A2Q6IF42 318 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 OR52E8Q6IFG1 317 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 Q6ZPB1 254 aaPredicted RBP2.4□□□□□ -2.03
VPS41-207ENST00000439468 RFLNAQ6ZTI6 216 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 EFL1Q7Z2Z2 1120 aaKnown RBP2.4□□□□□ -2.03
VPS41-207ENST00000439468 SLC26A11Q86WA9 606 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 TRIM69Q86WT6 500 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 CCDC50Q8IVM0 306 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 MFSD6LQ8IWD5 586 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 C20orf203Q8NBC4 194 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 BHLHE23Q8NDY6 225 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 OR9A1PQ8NGU1 263 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 MAGEE2Q8TD90 523 aaPredicted RBP2.4□□□□□ -2.03
VPS41-207ENST00000439468 DNAJA4Q8WW22 397 aaPredicted RBP2.4□□□□□ -2.03
VPS41-207ENST00000439468 FAM151AQ8WW52 585 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 HTR3CQ8WXA8 447 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 PAGE5Q96GU1 130 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 RPRD1AQ96P16 312 aaPredicted RBP2.4□□□□□ -2.03
VPS41-207ENST00000439468 FMO2Q99518 471 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 COPS8Q99627 209 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 RAB34Q9BZG1 259 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 NT5C3AQ9H0P0 336 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 AZI2Q9H6S1 392 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 NUDT15Q9NV35 164 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 SEC14L3Q9UDX4 400 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 NAP1L2Q9ULW6 460 aaPredicted RBP2.4□□□□□ -2.03
VPS41-207ENST00000439468 NEU3Q9UQ49 428 aa2.4□□□□□ -2.03
VPS41-207ENST00000439468 CAMSAP2Q08AD1 1489 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 USP32Q8NFA0 1604 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 DLC1Q96QB1 1528 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 TDRD6O60522 2096 aaKnown RBP2.39□□□□□ -2.03
VPS41-207ENST00000439468 PSMB11A5LHX3 300 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 SNTNA6NMZ2 147 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 MED7O43513 233 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 TRAF3IP2O43734 574 aaPredicted RBP2.39□□□□□ -2.03
VPS41-207ENST00000439468 ZNF861PO60384 105 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 UGT1A9O60656 530 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 FCMRO60667 390 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 B4GALT2O60909 372 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 SNAPINO95295 136 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 GAPDHP04406 335 aaKnown RBP2.39□□□□□ -2.03
VPS41-207ENST00000439468 HPNP05981 417 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 GABRR1P24046 479 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 COX7A1P24310 79 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 PRPS1P60891 318 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 SELENOTP62341 195 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 CKAP4Q07065 602 aaKnown RBP2.39□□□□□ -2.03
VPS41-207ENST00000439468 ORC2Q13416 577 aaPredicted RBP2.39□□□□□ -2.03
VPS41-207ENST00000439468 ZMYND11Q15326 602 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 PRSS41Q7RTY9 318 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 ZNF571Q7Z3V5 609 aaPredicted RBP2.39□□□□□ -2.03
VPS41-207ENST00000439468 RDH10Q8IZV5 341 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 CCDC71LQ8N9Z2 235 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 DCAF4L2Q8NA75 395 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 SDR9C7Q8NEX9 313 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 BRSK1Q8TDC3 778 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 SETD7Q8WTS6 366 aaKnown RBP2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms