RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 ACOXLQ9NUZ1 547 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 PCDHGB2Q9Y5G2 931 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 FAM240BA0A1B0GVZ2 78 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 CLDN4O14493 209 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 EEF1E1O43324 174 aaKnown RBP8.65□□□□□ -1.02
CUX1-206ENST00000437600 CHP2O43745 196 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 DOK2O60496 412 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 HCN1O60741 890 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 CTNSO60931 367 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 NUDT14O95848 222 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 SYPP08247 313 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 CD3GP09693 182 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 ZNF3P17036 446 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 HK1P19367 917 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 GPR3P46089 330 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 ZNF544Q6NX49 715 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 RNF113BQ8IZP6 322 aaKnown RBP8.65□□□□□ -1.02
CUX1-206ENST00000437600 KDM8Q8N371 416 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 ZNF433Q8N7K0 673 aaPredicted RBP8.65□□□□□ -1.02
CUX1-206ENST00000437600 OR4M1Q8NGD0 313 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 OR1L3Q8NH93 324 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 SNX33Q8WV41 574 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 ZDHHC12Q96GR4 267 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 ARRDC1-AS1Q9H2J1 176 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 GAREM1Q9H706 876 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 Q9N2J8 555 aa8.65□□□□□ -1.02
CUX1-206ENST00000437600 KRCC1Q9NPI7 259 aaPredicted RBP8.65□□□□□ -1.02
CUX1-206ENST00000437600 TRAV6A0A075B6T7 132 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 ACOD1A6NK06 481 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 PRR32B1ATL7 298 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 PLGP00747 810 aaPredicted RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 ITPKBP27987 946 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 AGFG1P52594 562 aaKnown RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 TATDN3Q17R31 274 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 IGSF11Q5DX21 431 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 MANEAQ5SRI9 462 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 FAM69BQ5VUD6 431 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 GUSBP11Q6P575 273 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 PLET1Q6UQ28 207 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 GPR135Q8IZ08 494 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 OR52N1Q8NH53 320 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 CCDC74AQ96AQ1 378 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 WDFY2Q96P53 400 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 SLC22A4Q9H015 551 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 SLC25A18Q9H1K4 315 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 TRIM36Q9NQ86 728 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 RXFP3Q9NSD7 469 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 CUTCQ9NTM9 273 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 PCNX2A6NKB5 2137 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 KMT2EQ8IZD2 1858 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 C11orf98E9PRG8 122 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 NSA2O95478 260 aaKnown RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 MT-ND5P03915 603 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 ADRB1P08588 477 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 CDKN2AP42771 156 aaKnown RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 SNRPD2P62316 118 aaKnown RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 ULK3Q6PHR2 472 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 C17orf82Q86X59 251 aaPredicted RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 OR8K3Q8NH51 312 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 THAP4Q8WY91 577 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 AP3S1Q92572 193 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 ATOH1Q92858 354 aaPredicted RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 UPRTQ96BW1 309 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 PELI1Q96FA3 418 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 FRMD6Q96NE9 622 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 C12orf4Q9NQ89 552 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 MED17Q9NVC6 651 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 MRPS33Q9Y291 106 aaKnown RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 SLC6A5Q9Y345 797 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 TRBV2A0A0J9YWF9 115 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 TEX13CA0A0J9YWL9 993 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 IRGMA1A4Y4 181 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 SERINC4A6NH21 518 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 SLC22A31A6NKX4 558 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 ERVH48-1M5A8F1 160 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 RGS9O75916 674 aaPredicted RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 RPS5P46782 204 aaKnown RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 SOX2P48431 317 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 ARRB1P49407 418 aaPredicted RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 ATP12AP54707 1039 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 Q5BKY6 102 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 EXOSC6Q5RKV6 272 aaKnown RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 STPG1Q5TH74 334 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 ZNF613Q6PF04 617 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 OGFOD3Q6PK18 319 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 GID4Q8IVV7 300 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 BEST4Q8NFU0 473 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 PTPMT1Q8WUK0 201 aaPredicted RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 SLC25A36Q96CQ1 311 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 KTI12Q96EK9 354 aaPredicted RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 DERL3Q96Q80 235 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 TSPAN10Q9H1Z9 355 aaPredicted RBP8.64□□□□□ -1.03
CUX1-206ENST00000437600 RNF121Q9H920 327 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 GALNT9Q9HCQ5 603 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 FAM86C1Q9NVL1 165 aa8.64□□□□□ -1.03
CUX1-206ENST00000437600 OR6C70A6NIJ9 312 aa8.63□□□□□ -1.03
CUX1-206ENST00000437600 LYRM1O43325 122 aa8.63□□□□□ -1.03
CUX1-206ENST00000437600 ZNF749O43361 778 aa8.63□□□□□ -1.03
CUX1-206ENST00000437600 DUX1O43812 170 aa8.63□□□□□ -1.03
CUX1-206ENST00000437600 KRR1Q13601 381 aaKnown RBP8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms