RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 AADACP22760 399 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 GGT5P36269 586 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 CSNK1A1P48729 337 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 EMP2P54851 167 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 ZNF705AQ6ZN79 300 aaPredicted RBP6.71□□□□□ -1.34
VPS53-204ENST00000437048 OR51F2Q8NH61 342 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 WFIKKN1Q96NZ8 548 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 IL21RQ9HBE5 538 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 PRTFDC1Q9NRG1 225 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 TIMM13Q9Y5L4 95 aaPredicted RBP6.71□□□□□ -1.34
VPS53-204ENST00000437048 NUP98P52948 1817 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 OR6C68A6NDL8 312 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 SLC38A8A6NNN8 435 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 OPN1SWP03999 348 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 THBS1P07996 1170 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 GSK3AP49840 483 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 ELOCQ15369 112 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 B3GNT8Q7Z7M8 397 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 MED12Q93074 2177 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 PDHXO00330 501 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 BRINP1O60477 761 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 F2P00734 622 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 CHRM5P08912 532 aaPredicted RBP6.71□□□□□ -1.34
VPS53-204ENST00000437048 CST2P09228 141 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 OR12D1P0DN82 309 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 NADSYN1Q6IA69 706 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 TEX261Q6UWH6 196 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 C16orf78Q8WTQ4 265 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 FUBP1Q96AE4 644 aaKnown RBP6.71□□□□□ -1.34
VPS53-204ENST00000437048 NEURL3Q96EH8 262 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 TVP23CQ96ET8 276 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 NECAP2Q9NVZ3 263 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 U3KQ87 197 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 LIMS3P0CW19 117 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 LIMS4P0CW20 117 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 PLCXD2Q0VAA5 305 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 OR4C11Q6IEV9 310 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 RANBP10Q6VN20 620 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 RELL2Q8NC24 303 aaPredicted RBP6.71□□□□□ -1.34
VPS53-204ENST00000437048 OR2D3Q8NGH3 330 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 NENFQ9UMX5 172 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 CSNK1G3Q9Y6M4 447 aa6.71□□□□□ -1.34
VPS53-204ENST00000437048 F5P12259 2224 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 BUD23O43709 281 aaKnown RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 CYC1P08574 325 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 CLINT1Q14677 625 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 RBM23Q86U06 439 aaKnown RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 SLC39A11Q8N1S5 342 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 GPR137CQ8N3F9 429 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 ARFGAP1Q8N6T3 406 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 HUS1BQ8NHY5 278 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 BPIFA2Q96DR5 249 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 SORT1Q99523 831 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 NDFIP1Q9BT67 221 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 SLC6A20Q9NP91 592 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 ACTL7AQ9Y615 435 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 LNP1A1A4G5 178 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 FAM24AA6NFZ4 105 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 ANHXE9PGG2 379 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 GPR171O14626 319 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 KCNAB3O43448 404 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 BCL2L11O43521 198 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 EIF1BO60739 113 aaKnown RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 ZNF354AO60765 605 aaPredicted RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 IGHG1P01857 330 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 COX5AP20674 150 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 MSX1P28360 303 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 EXT1Q16394 746 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 RPE65Q16518 533 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 ZNF628Q5EBL2 1059 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 MBOAT2Q6ZWT7 520 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 TSTD1Q8NFU3 115 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 NPRL2Q8WTW4 380 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 DOK1Q99704 481 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 ACTR3CQ9C0K3 210 aaPredicted RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 MTCP1P56278 107 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 DLX2Q07687 328 aaPredicted RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 TOMM34Q15785 309 aaPredicted RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 COMMD6Q7Z4G1 85 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 SLC25A44Q96H78 314 aaPredicted RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 OR51I2Q9H344 312 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 REV1Q9UBZ9 1251 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 MED16Q9Y2X0 877 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 PTBP3O95758 552 aaKnown RBP6.7□□□□□ -1.34
VPS53-204ENST00000437048 PGA3P0DJD8 388 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 CPEP16870 476 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 SGSHP51688 502 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 PGGT1BP53609 377 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 TLE1Q04724 770 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 SMAGPQ0VAQ4 97 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 AQP6Q13520 282 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 IGDCC3Q8IVU1 814 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 FAM122AQ96E09 287 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 ARHGDIGQ99819 225 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 SHARPINQ9H0F6 387 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 HS3ST4Q9Y661 456 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 GFOD2Q3B7J2 385 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 ADAM5Q6NVV9 412 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 PRICKLE2Q7Z3G6 844 aa6.7□□□□□ -1.34
VPS53-204ENST00000437048 PLXDC1Q8IUK5 500 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms