RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 PER3P56645 1201 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 PRPS1P60891 318 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 DYRK1AQ13627 763 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 CLPPQ16740 277 aaPredicted RBP10.78□□□□□ -0.68
CD44-209ENST00000433892 PRTGQ2VWP7 1150 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 TMEM255AQ5JRV8 349 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 BAIAP2L2Q6UXY1 529 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 ZNF782Q6ZMW2 699 aaPredicted RBP10.78□□□□□ -0.68
CD44-209ENST00000433892 CMIPQ8IY22 773 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 OR6C4Q8NGE1 309 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 OR52I2Q8NH67 350 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 OR56B4Q8NH76 319 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 RNF166Q96A37 237 aaPredicted RBP10.78□□□□□ -0.68
CD44-209ENST00000433892 SLC25A38Q96DW6 304 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 GPR137Q96N19 417 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 MOGAT1Q96PD6 335 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 C20orf85Q9H1P6 137 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 LIN7BQ9HAP6 207 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 RXFP3Q9NSD7 469 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 MRPL39Q9NYK5 338 aaKnown RBP10.78□□□□□ -0.68
CD44-209ENST00000433892 ALPK2Q86TB3 2170 aa10.78□□□□□ -0.68
CD44-209ENST00000433892 TP53BP1Q12888 1972 aaPredicted RBP10.77□□□□□ -0.68
CD44-209ENST00000433892 SPTY2D1-AS1A0A0U1RR47 76 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 TMEM72A0PK05 275 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 ELOA3DA6NLF2 546 aaPredicted RBP10.77□□□□□ -0.69
CD44-209ENST00000433892 AIPO00170 330 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 OIP5O43482 229 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 HPXP02790 462 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 F13BP05160 661 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 THEGLP0DJG4 465 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 OR8G3PP0DMU2 310 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 POU3F3P20264 500 aaPredicted RBP10.77□□□□□ -0.69
CD44-209ENST00000433892 DRD1P21728 446 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 UQCRC1P31930 480 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 GRK6P43250 576 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 P2RX3P56373 397 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 MRPS21P82921 87 aaKnown RBP10.77□□□□□ -0.69
CD44-209ENST00000433892 C19orf57Q0VDD7 668 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 HTR4Q13639 388 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 FZD2Q14332 565 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 CD226Q15762 336 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 ELOA3BQ3SY89 546 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 CBLN3Q6UW01 205 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 ZNF595Q8IYB9 648 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 ELOA3Q8NG57 546 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 ZDHHC1Q8WTX9 485 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 PIGKQ92643 395 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 MRPL38Q96DV4 380 aaKnown RBP10.77□□□□□ -0.69
CD44-209ENST00000433892 CLIP3Q96DZ5 547 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 MRPL48Q96GC5 212 aaKnown RBP10.77□□□□□ -0.69
CD44-209ENST00000433892 C7orf50Q9BRJ6 194 aaKnown RBP10.77□□□□□ -0.69
CD44-209ENST00000433892 KLK11Q9UBX7 282 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 KLHDC2Q9Y2U9 406 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 SLCO1B1Q9Y6L6 691 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 EML5Q05BV3 1969 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 SULT1A3P0DMM9 295 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 SULT1A4P0DMN0 295 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 PTHLHP12272 177 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 DPP4P27487 766 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 CCR9P51686 369 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 MAZP56270 477 aaKnown RBP10.77□□□□□ -0.69
CD44-209ENST00000433892 IGLV3-21P80748 117 aaPredicted RBP10.77□□□□□ -0.69
CD44-209ENST00000433892 HSF2Q03933 536 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 KLHL26Q53HC5 615 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 TEX261Q6UWH6 196 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 MED25Q71SY5 747 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 JAZF1Q86VZ6 243 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 SLC35F3Q8IY50 421 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 ZNF615Q8N8J6 731 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 ZNF527Q8NB42 609 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 MMABQ96EY8 250 aaPredicted RBP10.77□□□□□ -0.69
CD44-209ENST00000433892 MAP3K3Q99759 626 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 SPRTNQ9H040 489 aaPredicted RBP10.77□□□□□ -0.69
CD44-209ENST00000433892 SRA1Q9HD15 236 aaKnown RBP10.77□□□□□ -0.69
CD44-209ENST00000433892 HRASLSQ9HDD0 168 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 NANSQ9NR45 359 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 TMEM184BQ9Y519 407 aaPredicted RBP10.77□□□□□ -0.69
CD44-209ENST00000433892 U3KQ87 197 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 V9GY05 133 aa10.77□□□□□ -0.69
CD44-209ENST00000433892 MEIKINA0A087WXM9 373 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 H7C1C5 153 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 DCTN6O00399 190 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 PDCD5O14737 125 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 HPGDP15428 266 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 SOX2P48431 317 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 RAG2P55895 527 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 CTXN1P60606 82 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 LCN6P62502 163 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 RPS15P62841 145 aaKnown RBP10.76□□□□□ -0.69
CD44-209ENST00000433892 FUT7Q11130 342 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 CAMK2DQ13557 499 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 ZNF74Q16587 644 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 ZNF684Q5T5D7 378 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 LIPNQ5VXI9 398 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 FAM109AQ8N4B1 249 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 LSM14AQ8ND56 463 aaKnown RBP10.76□□□□□ -0.69
CD44-209ENST00000433892 ZNF680Q8NEM1 530 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 OR11G2Q8NGC1 345 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 PHOSPHO1Q8TCT1 267 aa10.76□□□□□ -0.69
CD44-209ENST00000433892 RPS4Y2Q8TD47 263 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms