RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 HMGN1P05114 100 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 ALPLP05186 524 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 ASAH2BP0C7U1 165 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 MAKP20794 623 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 AGFG1P52594 562 aaKnown RBP9.05□□□□□ -0.96
CD44-207ENST00000425428 SUCLG1P53597 346 aaKnown RBP9.05□□□□□ -0.96
CD44-207ENST00000425428 HSF1Q00613 529 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 RASGEF1BQ0VAM2 473 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 ZNF239Q16600 458 aaKnown RBP9.05□□□□□ -0.96
CD44-207ENST00000425428 EEF1A1P5Q5VTE0 462 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 KDM4DQ6B0I6 523 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 ZNF770Q6IQ21 691 aaPredicted RBP9.05□□□□□ -0.96
CD44-207ENST00000425428 SLC27A4Q6P1M0 643 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 CASP12Q6UXS9 341 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 DPY19L2P2Q6ZN68 376 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 CD163Q86VB7 1156 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 HS3ST5Q8IZT8 346 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 OR2T33Q8NG76 320 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 OR13C2Q8NGS9 318 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 ZNF524Q96C55 264 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 MOGAT1Q96PD6 335 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 PTDSS2Q9BVG9 487 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 PARPBPQ9NWS1 579 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 HIF3AQ9Y2N7 669 aa9.05□□□□□ -0.96
CD44-207ENST00000425428 RP1L1Q8IWN7 2480 aaPredicted RBP9.04□□□□□ -0.96
CD44-207ENST00000425428 PLPP3O14495 311 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 SOCS2O14508 198 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 IDH3BO43837 385 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 SERPINI2O75830 405 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 BCL10O95999 233 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 PAICSP22234 425 aaKnown RBP9.04□□□□□ -0.96
CD44-207ENST00000425428 ACVR2AP27037 513 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 SHC1P29353 583 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 DAPP51397 102 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 CTXN1P60606 82 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 CDC42P60953 191 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 PPP2R2BQ00005 443 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 ZP4Q12836 540 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 SLC36A3Q495N2 470 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 C1orf185Q5T7R7 199 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 C1QL3Q5VWW1 255 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 TTC23Q5W5X9 447 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 FAM205BPQ63HN1 556 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 GPR139Q6DWJ6 353 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 KLHL17Q6TDP4 642 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 B3GNT6Q6ZMB0 384 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 SLC46A3Q7Z3Q1 461 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 PXKQ7Z7A4 578 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 JAZF1Q86VZ6 243 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 DHRSXQ8N5I4 330 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 LRRC17Q8N6Y2 441 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 TMEM99Q8N816 258 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 WNT2BQ93097 391 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 TNFRSF13CQ96RJ3 184 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 APOL4Q9BPW4 351 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 NIPSNAP1Q9BPW8 284 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 TUBA1CQ9BQE3 449 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 TSSK6Q9BXA6 273 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 POLDIP3Q9BY77 421 aaKnown RBP9.04□□□□□ -0.96
CD44-207ENST00000425428 OR52D1Q9H346 318 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 GP6Q9HCN6 339 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 FANCFQ9NPI8 374 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 PNPLA3Q9NST1 481 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 IMPAD1Q9NX62 359 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 TNFRSF10DQ9UBN6 386 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 EMC9Q9Y3B6 208 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 MAGED1Q9Y5V3 778 aaPredicted RBP9.04□□□□□ -0.96
CD44-207ENST00000425428 ARHGAP21Q5T5U3 1957 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 COL6A6A6NMZ7 2263 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 TRGV8A0A0C4DH27 118 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 A6NIZ1 184 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 FTCDNL1E5RQL4 147 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 KRT33AO76009 404 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 SOX14O95416 240 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 AQP2P41181 271 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 TDGF1P3P51864 188 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 CRISP1P54107 249 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 RAP1BP61224 184 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 RAP1AP62834 184 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 POU3F1Q03052 451 aaPredicted RBP9.04□□□□□ -0.96
CD44-207ENST00000425428 RPL18Q07020 188 aaKnown RBP9.04□□□□□ -0.96
CD44-207ENST00000425428 NPRL3Q12980 569 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 PDK3Q15120 406 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 C3AR1Q16581 482 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 CTU2Q2VPK5 515 aaKnown RBP9.04□□□□□ -0.96
CD44-207ENST00000425428 EMC4Q5J8M3 183 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 ZNF620Q6ZNG0 422 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 MEX3DQ86XN8 651 aaKnown RBP9.04□□□□□ -0.96
CD44-207ENST00000425428 DEPDC4Q8N2C3 294 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 SETD9Q8NE22 299 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 CYGBQ8WWM9 190 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 ADGRG7Q96K78 797 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 ADAD1Q96M93 576 aaKnown RBP9.04□□□□□ -0.96
CD44-207ENST00000425428 ZNF570Q96NI8 536 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 ZFP3Q96NJ6 502 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 BARD1Q99728 777 aaKnown RBP9.04□□□□□ -0.96
CD44-207ENST00000425428 B3GAT2Q9NPZ5 323 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 IL20Q9NYY1 176 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 SIGLEC7Q9Y286 467 aa9.04□□□□□ -0.96
CD44-207ENST00000425428 USP24Q9UPU5 2620 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms