RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 TGFBR3Q03167 851 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 TRAP1Q12931 704 aaKnown RBP12.98□□□□□ -0.33
LIMS1-206ENST00000414829 BNIP1Q12981 228 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 ITGADQ13349 1161 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 DGCR6Q14129 220 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 TAF11Q15544 211 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 ANKDD1AQ495B1 522 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 FBXW9Q5XUX1 488 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 ZNF730Q6ZMV8 503 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 WDR88Q6ZMY6 472 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 AAED1Q7RTV5 226 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 NANOGNBQ7Z5D8 188 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 UEVLDQ8IX04 471 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 GABRG1Q8N1C3 465 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 UBE2J2Q8N2K1 259 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 PIK3C3Q8NEB9 887 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 ANKK1Q8NFD2 765 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 ACOT11Q8WXI4 607 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-206ENST00000414829 CCDC124Q96CT7 223 aaKnown RBP12.98□□□□□ -0.33
LIMS1-206ENST00000414829 SGTBQ96EQ0 304 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 PIP5K1AQ99755 562 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 PRSS27Q9BQR3 290 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 THTPAQ9BU02 230 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 MED18Q9BUE0 208 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 MMADHCQ9H3L0 296 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-206ENST00000414829 MAGIXQ9H6Y5 334 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 ASB6Q9NWX5 421 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 NDUFAF4Q9P032 175 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 TMEM5Q9Y2B1 443 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 ADGRG4Q8IZF6 3080 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 PCNX3Q9H6A9 2034 aa12.98□□□□□ -0.33
LIMS1-206ENST00000414829 RAMP1O60894 148 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 DNAJC8O75937 253 aaPredicted RBP12.97□□□□□ -0.33
LIMS1-206ENST00000414829 KRT33AO76009 404 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 PDE5AO76074 875 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 OR7A10O76100 309 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 CH25HO95992 272 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 THY1P04216 161 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 EPXP11678 715 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 COX5AP20674 150 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 FAM27E3Q08E93 113 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 FAM98BQ52LJ0 330 aaKnown RBP12.97□□□□□ -0.33
LIMS1-206ENST00000414829 ZNF787Q6DD87 383 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 STAC2Q6ZMT1 411 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 CREB3L2Q70SY1 520 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 PXKQ7Z7A4 578 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 TSPYL5Q86VY4 417 aaPredicted RBP12.97□□□□□ -0.33
LIMS1-206ENST00000414829 P2RY8Q86VZ1 359 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 P3H2Q8IVL5 708 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 TMEM255BQ8WV15 326 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 LIPHQ8WWY8 451 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 SLCO5A1Q9H2Y9 848 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 NMNAT1Q9HAN9 279 aaPredicted RBP12.97□□□□□ -0.33
LIMS1-206ENST00000414829 NGBQ9NPG2 151 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 IL1RAPQ9NPH3 570 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 TAS2R16Q9NYV7 291 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 CRIM1Q9NZV1 1036 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 STX18Q9P2W9 335 aaKnown RBP12.97□□□□□ -0.33
LIMS1-206ENST00000414829 UPB1Q9UBR1 384 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 TESMINQ9Y4I5 508 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 CACNA1CQ13936 2221 aa12.97□□□□□ -0.33
LIMS1-206ENST00000414829 PLPP3O14495 311 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 SLC43A1O75387 559 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 HOXC12P31275 282 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 IFNGR2P38484 337 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 ZP4Q12836 540 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 FGD3Q5JSP0 725 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 SFRP5Q5T4F7 317 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 OR7E24Q6IFN5 339 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 NKAIN4Q8IVV8 208 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 C17orf78Q8N4C9 275 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 C1orf162Q8NEQ5 155 aaPredicted RBP12.96□□□□□ -0.33
LIMS1-206ENST00000414829 BPIFA2Q96DR5 249 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 C7orf34Q96L11 122 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 ADAD1Q96M93 576 aaKnown RBP12.96□□□□□ -0.33
LIMS1-206ENST00000414829 MOGAT1Q96PD6 335 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 ACTR6Q9GZN1 396 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 MCCC2Q9HCC0 563 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 B3GAT2Q9NPZ5 323 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 B3GAT1Q9P2W7 334 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 V9GYQ6 96 aa12.96□□□□□ -0.33
LIMS1-206ENST00000414829 ANKHD1Q8IWZ3 2542 aaKnown RBP12.95□□□□□ -0.34
LIMS1-206ENST00000414829 KIAA1549Q9HCM3 1950 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 ZNF587BE7ETH6 402 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 ENTPD5O75356 428 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 PRSS23O95084 383 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 ADAP00813 363 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 SEMG1P04279 462 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 ASAH2BP0C7U1 165 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 ADORA3P0DMS8 318 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 NR2C1P13056 603 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 AHCYP23526 432 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 PAX7P23759 505 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 CCKARP32238 428 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 MSX2P35548 267 aaPredicted RBP12.95□□□□□ -0.34
LIMS1-206ENST00000414829 YAP1P46937 504 aaKnown RBP12.95□□□□□ -0.34
LIMS1-206ENST00000414829 SLC9A3P48764 834 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 DAP3P51398 398 aaKnown RBP12.95□□□□□ -0.34
LIMS1-206ENST00000414829 UGT2B15P54855 530 aa12.95□□□□□ -0.34
LIMS1-206ENST00000414829 SH3BGRP55822 239 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms