RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PRKCAP17252 672 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 CXCR1P25024 350 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 FNTBP49356 437 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 UBE2MP61081 183 aaKnown RBP12.22□□□□□ -0.45
VPS54-203ENST00000409558 RNF113BQ8IZP6 322 aaKnown RBP12.22□□□□□ -0.45
VPS54-203ENST00000409558 MS4A3Q96HJ5 214 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 A0A0A6YYJ9 748 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 NDUFB5O43674 189 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 ZFPL1O95159 310 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 UTS2O95399 124 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 YES1P07947 543 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 TMIGD3P0DMS9 266 aaPredicted RBP12.22□□□□□ -0.45
VPS54-203ENST00000409558 UBL4AP11441 157 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 TMEM44Q2T9K0 475 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 BICRALQ6AI39 1079 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 MRGPREQ86SM8 312 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 OR5M1Q8NGP8 315 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 TSEN15Q8WW01 171 aaKnown RBP12.22□□□□□ -0.45
VPS54-203ENST00000409558 NSMAFQ92636 917 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 MRPS18AQ9NVS2 196 aaKnown RBP12.22□□□□□ -0.45
VPS54-203ENST00000409558 ING3Q9NXR8 418 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 LAMP5Q9UJQ1 280 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 SPTBN2O15020 2390 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 KIF26BQ2KJY2 2108 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 DCNP07585 359 aaKnown RBP12.22□□□□□ -0.45
VPS54-203ENST00000409558 FBXW4P57775 412 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 EFR3AQ14156 821 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 LIPNQ5VXI9 398 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 SMRP1Q8NCR6 262 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 DUSP19Q8WTR2 217 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 CTHRC1Q96CG8 243 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 TCF7L1Q9HCS4 588 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 RXFP3Q9NSD7 469 aa12.22□□□□□ -0.45
VPS54-203ENST00000409558 LGALS3BPQ08380 585 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 ELOCQ15369 112 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 STPG1Q5TH74 334 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 PGLYRP3Q96LB9 341 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 CUTCQ9NTM9 273 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 CTSFQ9UBX1 484 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 SOX1O00570 391 aaPredicted RBP12.21□□□□□ -0.45
VPS54-203ENST00000409558 ANKRD34CP0C6C1 535 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 CXCL3P19876 107 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 ARRB1P49407 418 aaPredicted RBP12.21□□□□□ -0.45
VPS54-203ENST00000409558 PLA2G7Q13093 441 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 SNTB2Q13425 540 aaKnown RBP12.21□□□□□ -0.45
VPS54-203ENST00000409558 CD200R1LQ6Q8B3 271 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 DEDD2Q8WXF8 326 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 NR4A3Q92570 626 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 SNAPC3Q92966 411 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 G6PC3Q9BUM1 346 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 SATB2Q9UPW6 733 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 FKBP7Q9Y680 259 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 CACNG2Q9Y698 323 aa12.21□□□□□ -0.45
VPS54-203ENST00000409558 NUP210Q8TEM1 1887 aaPredicted RBP12.21□□□□□ -0.45
VPS54-203ENST00000409558 OR5K4A6NMS3 321 aa12.21□□□□□ -0.46
VPS54-203ENST00000409558 NOS1APO75052 506 aaPredicted RBP12.21□□□□□ -0.46
VPS54-203ENST00000409558 MPZL1O95297 269 aa12.21□□□□□ -0.46
VPS54-203ENST00000409558 RPS15P62841 145 aaKnown RBP12.21□□□□□ -0.46
VPS54-203ENST00000409558 GPALPP1Q8IXQ4 340 aa12.21□□□□□ -0.46
VPS54-203ENST00000409558 OR2B2Q9GZK3 357 aa12.21□□□□□ -0.46
VPS54-203ENST00000409558 GVINP1Q7Z2Y8 2422 aa12.21□□□□□ -0.46
VPS54-203ENST00000409558 GDF9O60383 454 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 FOLR1P15328 257 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 GPR3P46089 330 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 CAPZBP47756 277 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 RPL18Q07020 188 aaKnown RBP12.2□□□□□ -0.46
VPS54-203ENST00000409558 PLCXD2Q0VAA5 305 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 OR7E24Q6IFN5 339 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 SLC25A25Q6KCM7 469 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 FAM220AQ7Z4H9 259 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 LPAR4Q99677 370 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 LIN7BQ9HAP6 207 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 CENPMQ9NSP4 180 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 SLC22A13Q9Y226 551 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 POLHQ9Y253 713 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 FAM47E-STBD1D6RA91 191 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 FMO6PO60774 539 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 MTNR1BP49286 362 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 GPR143P51810 404 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 GFOD2Q3B7J2 385 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 LRRC28Q86X40 367 aaPredicted RBP12.2□□□□□ -0.46
VPS54-203ENST00000409558 CMTM4Q8IZR5 234 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 NPEPL1Q8NDH3 523 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 AMELYQ99218 206 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 NPAS1Q99742 590 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 KCNG2Q9UJ96 466 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 SPATA2Q9UM82 520 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 HS3ST3A1Q9Y663 406 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 PI4KAP42356 2102 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 FAM172BPA6NC97 362 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 CCKBRP32239 447 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 CDK5R1Q15078 307 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 SF3A2Q15428 464 aaKnown RBP12.2□□□□□ -0.46
VPS54-203ENST00000409558 OR2I1PQ8NGU4 316 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 METTL21AQ8WXB1 218 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 TAAR8Q969N4 342 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 C8orf44Q96CB5 159 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 MED18Q9BUE0 208 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 MOV10Q9HCE1 1003 aaKnown RBP12.2□□□□□ -0.46
VPS54-203ENST00000409558 C14orf105Q9NVL8 296 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms