RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ADOQ96SZ5 270 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 MACROD1Q9BQ69 325 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 HCAR1Q9BXC0 346 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 NMNAT2Q9BZQ4 307 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 SEMA4GQ9NTN9 838 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 FTSJ1Q9UET6 329 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 GAB2Q9UQC2 676 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 KIAA1324LA8MWY0 1029 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 SEC14L6B5MCN3 397 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 PRAMEF26H0Y7S4 382 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 NUDT21O43809 227 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 AIFM1O95831 613 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 HOXB5P09067 269 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 C1SP09871 688 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 HOXD9P28356 352 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 DCAF7P61962 342 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 SLC17A1Q14916 467 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 ARSJQ5FYB0 599 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 PAQR9Q6ZVX9 377 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 MBOAT2Q6ZWT7 520 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 SLC39A11Q8N1S5 342 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 PCNPQ8WW12 178 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 EMC7Q9NPA0 242 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 EHFQ9NZC4 300 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 PRELID3BQ9Y3B1 194 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 NAV1Q8NEY1 1877 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 FABP7O15540 132 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 GABRR1P24046 479 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 TAGLN2P37802 199 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 TNK1Q13470 666 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 HABP2Q14520 560 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 TECPR1Q7Z6L1 1165 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 FUNDC1Q8IVP5 155 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 KDM3BQ7LBC6 1761 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 ZNF587BE7ETH6 402 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 ADAM23O75077 832 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 FURINP09958 794 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 OR8G3PP0DMU2 310 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 PAX6P26367 422 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 MSX1P28360 303 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 EPHA4P54764 986 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 CEBPEQ15744 281 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 LYSMD2Q8IV50 215 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 GCDHQ92947 438 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 FAM122AQ96E09 287 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 HSFX1Q9UBD0 423 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 TRDV1A0A1B0GX56 115 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 TCRBV5S1A1TA0A578 114 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 SURF4O15260 269 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 IGHG1P01857 330 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 TRAPPC2P0DI81 140 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 TRAPPC2BP0DI82 140 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 HOXD11P31277 338 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 SNCAP37840 140 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 TAS2R30P59541 319 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 SEC61A1P61619 476 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 GPLD1P80108 840 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 LRRC26Q2I0M4 334 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 TRIM61Q5EBN2 209 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 SLX4IPQ5VYV7 408 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 TRAPPC6BQ86SZ2 158 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 CELF2-AS1Q8N7Q2 184 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 OR4K15Q8NH41 348 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 LGALS14Q8TCE9 139 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 GHSRQ92847 366 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 MIB2Q96AX9 1013 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 C11orf54Q9H0W9 315 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 CAMK2AQ9UQM7 478 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 ACOD1A6NK06 481 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 ANKRD30BLA7E2S9 258 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 TCAPO15273 167 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 TCRBP04435 133 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 GPX2P18283 190 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 USF1P22415 310 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 IMPA1P29218 277 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 ATP1B3P54709 279 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 MORN1Q5T089 497 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 SLCO4C1Q6ZQN7 724 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 MKXQ8IYA7 352 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 OR6T1Q8NGN1 323 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 NXF5Q9H1B4 397 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 VSX1Q9NZR4 365 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 CPNE7Q9UBL6 633 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 OR2A25A4D2G3 310 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 HIDE1A8MVS5 230 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 ENSAO43768 121 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 SLC10A3P09131 477 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 ZNF28P17035 718 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 PTBP1P26599 531 aaKnown RBP eCLIP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 HTR1FP30939 366 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 APLNRP35414 380 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 PTTG1IPP53801 180 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 PLA2G7Q13093 441 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 RBM39Q14498 530 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 LTB4RQ15722 352 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 Q6ZSR6 202 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 MFSD9Q8NBP5 474 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 OR52N1Q8NH53 320 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 ABHD4Q8TB40 342 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms